Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12550 318 / 2e-108 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 297 / 7e-100 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G79870 216 / 2e-68 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G28310 89 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G72190 76 / 2e-15 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT4G34200 73 / 4e-14 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 72 / 1e-13 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT3G19480 71 / 2e-13 D-3-phosphoglycerate dehydrogenase (.1) AT5G14780 66 / 8e-12 FDH formate dehydrogenase (.1) AT1G68010 62 / 2e-10 ATHPR1, HPR hydroxypyruvate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014133 [exp] 537 / 0 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041393 [exp] 271 / 8e-90 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 268 / 1e-88 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 246 / 4e-80 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 244 / 3e-79 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 236 / 4e-76 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 221 / 2e-70 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 215 / 5e-68 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10040679 [exp] 189 / 4e-58 AT2G45630 124 / 1e-34 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113250 [exp] 332 / 1e-113 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 319 / 2e-108 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 297 / 6e-100 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 285 / 3e-95 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 286 / 5e-95 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 268 / 1e-88 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 236 / 4e-76 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 226 / 4e-72 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G022800 [exp] 77 / 1e-15 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 76 / 4e-15 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10006708 pacid=23152221 polypeptide=Lus10006708 locus=Lus10006708.g ID=Lus10006708.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCCGGCGAGGATTCTTCCCTCCCCTTAATCCTAATCCACCGCTATCCATCCTTCACTGGCTCCATGTTCCCCGCCTTATCCACTCACTTCC GCCTCCTGGACCTGCTCAGCTCCGACGCTTCACCCTCAATTCTTCGATCCGCCACCGCTGCCCTGTGCGTCGGACCTCCGCCTCCTGTCACGTCCGATTT CCTCGATCGCTTTCCCTCCGTCAGGATCGTCGTCTGCTCCAGCGTTGGAGTCGACCACGTTGACCTGGCCGAGTGTCGGCGTAGAGGCGTCGCCGTCACC AACGCCGGGTCCGCCTTCGCTGAGGACGTGGCCGACTACGCCGTCGCGTTGCTGATTGACGTTTTGAGGAGCATTTCGGCTGGTGATCGGTACGTTCGCG CCGGCTGCTGGCCCGTTAAAGGAGATTATCCTCTCGGCTCCAAGCTGGGAGGAAAACGAGTCGGGATTCTAGGACTCGGACGAATCGGCTCATTGATCGC GACTCGCTTGGCAGCGTTCGGCTGCCCGATCAGCTACTGTTCTCGGGGTGAGAAGCCATCTCTGCCGTTTCGATTCCACTCCACGGCTCTCGATCTGGCG GCAAACAACGATGTCCTGATCGCGTGTTGCAGCCTGACCGATGAGACCTTCCACGTGATCGACGGCGAGGTCATGAAGGCGCTAGGCAAACGAGGAGTGA TCGTCAATGTCGGACGCGGAGCCCTAATCGATGAGAAGGAGCTCGTTCAGTTTCTCATCCGTGGTAATCTCGGCGGCGCCGGATTGGACGTGTTCGAGGA CGAGCCGAACGTGGCCAAGGAACTCTTCGCGTTGGATAACGTCGTGCTATCGCCGCACTCTGCCGTGATCACCCCGGAGTCGATCGGTGCTTCCCAGGAT ATCTCGATCAGGAATCTGAAGGCGTTCTTCTCAAAGCAACCTCTGATTTCGCCGGTCTAG
AA sequence Show only first row Show all	>Lus10006708 pacid=23152221 polypeptide=Lus10006708 locus=Lus10006708.g ID=Lus10006708.BGIv1.0 annot-version=v1.0 MAAAGEDSSLPLILIHRYPSFTGSMFPALSTHFRLLDLLSSDASPSILRSATAALCVGPPPPVTSDFLDRFPSVRIVVCSSVGVDHVDLAECRRRGVAVT NAGSAFAEDVADYAVALLIDVLRSISAGDRYVRAGCWPVKGDYPLGSKLGGKRVGILGLGRIGSLIATRLAAFGCPISYCSRGEKPSLPFRFHSTALDLA ANNDVLIACCSLTDETFHVIDGEVMKALGKRGVIVNVGRGALIDEKELVQFLIRGNLGGAGLDVFEDEPNVAKELFALDNVVLSPHSAVITPESIGASQD ISIRNLKAFFSKQPLISPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	0	1
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	1.7	0.9511
AT1G24560			unknown protein		Lus10013022 [exp]	3.2	0.9288
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	3.3	0.9282
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	4.7	0.9341
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	4.9	0.9279
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10014296 [exp]	6.0	0.9235
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	6.5	0.9227
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	9.2	0.9340
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	9.7	0.9042
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	11.3	0.9320

Compare expression of checked genes

Lus10006708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.