Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22880 525 / 0 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT5G08640 254 / 4e-81 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G05600 216 / 4e-66 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 213 / 9e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 210 / 5e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G63590 199 / 4e-60 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT4G22870 187 / 2e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 195 / 5e-58 ATJRG21 jasmonate-regulated gene 21 (.1) AT4G16330 188 / 2e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43935 179 / 5e-53 ATFLS6, FLS6 flavonol synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014134 [exp] 690 / 0 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10025619 [exp] 258 / 1e-82 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10028068 [exp] 233 / 4e-73 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 224 / 1e-69 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10004808 [exp] 210 / 4e-64 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 187 / 4e-55 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 184 / 5e-54 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037292 [exp] 183 / 4e-53 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022292 [exp] 179 / 4e-52 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113100 [exp] 551 / 0 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.003G119100 [exp] 551 / 0 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.019G014454 [exp] 263 / 7e-85 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 254 / 2e-81 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 245 / 1e-77 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.016G117100 [exp] 228 / 7e-71 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G086700 [exp] 219 / 1e-67 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.008G069300 [exp] 219 / 2e-67 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 219 / 2e-67 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 206 / 2e-62 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006709 pacid=23152209 polypeptide=Lus10006709 locus=Lus10006709.g ID=Lus10006709.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCGGTAGCTTCGAGAGTCGAGGGCTTAGCAAGCAATGGGTCTCCGACACAACAGACTCGAATAGTGGCTTCGGTAGCTTCAGAAGTTGAGA GCTTAGCAAACAACGGTCCTCCCACACGGAAGACTCAAATAGTGGCTTCAGTAGCTTCAGAAGTCGATAGCTTAGCAAGCAATGGGCATCCCAAAGTGCA GAATCAAATGGCGGCTTCAATAGCTTCTGAAGTCGAGAGCTTAGCGAGCAATGGGCATCCCAAAGAGCAGAATCAAATGGCGGCTTCGGTACCTTCACGA GTCGAGAGCTTGGCGAGCAGCGGGATCGTATCGATCCCGAAAGAGTACATCAGGCCGGAAAACGAGCTAAAGAGCATTGGAGACGTGTTCGAGGAAGAGA AGAATCAAGAAGGGCCCCAAGTTCCCACCATTGATTTGAAAGGGATGGACTCGGAAGACATGGTAGTCCGCGAGAAGTGCAGGGCGCAGCTTATTGATGC AGCAAAGGAGTTGGGCGTTATGCACCTGATCAACCATGGCATTCCTGACGATCTCATCGAATCTGTGAAGAAAGCAGGGGAGGAGTTCTTCAACCTTCCT GTAGAGGAAAAGGAGAAGTATGCGAATGATCAAGCTTCGGGGAAGATTCAAGGGTATGGAAGCAAGCTTGCTAACAATGCTAGTGGGCAGCTTGAATGGG AAGACTATTTCTTCCACCTTGTCTTCCCTGAGGAACAAAGAGACCTCTCCATCTGGCCGAAGAACCCTGCTGACTACACCAAGGTGACTAGTGAATATGC AAGGCAGCTGAGAAAGCTAACGACCAAAATCCTGTCAGTTCTGTCTCTTGGCTTGGGACTAGAAGAAGGAAGGCTGGAGAAAGAAATCGGAGGGATTGAA GAGCTGCTGCTTCAGATGAAGATCAACTACTACCCCAAGTGTCCACAGCCTGAACTAGCCCTCGGTGTGGAAGCTCACACCGATATCAGTGCCCTAACTT TCATCCTCCACAACATGGTCCCTGGTCTGCAACTCTTCTATGAGGACAAATGGGTGATTGCGAAATGTGTCCCGAACTCCATCATCATGCATATCGGGGA CACTCTCGAGATCCTGAGCAATGGAAAGTACAAGAGCATCCTCCACAGGGGACTTGTTAACAAGGAGAAGGTCAGAATCTCATGGGCGGTCTTTGCCGAG CCGCATAAGGAGAAGATCATACTCCAGCCATTGCCAGAGGTGGTTACTGATGCAGAGCCAGCACTGTTCCCTCCTCGCACTTTCGCTCAGCATATCGAGC ATAAGGTGTTCAGGAAGAGCCAGGAAGATGCCCTTCTGGACAAATGA
AA sequence Show only first row Show all	>Lus10006709 pacid=23152209 polypeptide=Lus10006709 locus=Lus10006709.g ID=Lus10006709.BGIv1.0 annot-version=v1.0 MAASVASRVEGLASNGSPTQQTRIVASVASEVESLANNGPPTRKTQIVASVASEVDSLASNGHPKVQNQMAASIASEVESLASNGHPKEQNQMAASVPSR VESLASSGIVSIPKEYIRPENELKSIGDVFEEEKNQEGPQVPTIDLKGMDSEDMVVREKCRAQLIDAAKELGVMHLINHGIPDDLIESVKKAGEEFFNLP VEEKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHLVFPEEQRDLSIWPKNPADYTKVTSEYARQLRKLTTKILSVLSLGLGLEEGRLEKEIGGIE ELLLQMKINYYPKCPQPELALGVEAHTDISALTFILHNMVPGLQLFYEDKWVIAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFAE PHKEKIILQPLPEVVTDAEPALFPPRTFAQHIEHKVFRKSQEDALLDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10006709 [exp]	0	1
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	4.8	0.8519
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	6.8	0.8519
					Lus10006529 [exp]	8.3	0.8519
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	9.6	0.8519
					Lus10035557 [exp]	10.7	0.8519
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	11.7	0.8519
					Lus10005297 [exp]	12.7	0.8519
					Lus10013260 [exp]	13.6	0.8519
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10032426 [exp]	14.1	0.8449
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	15.0	0.8476

Compare expression of checked genes

Lus10006709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.