Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22890 451 / 6e-161 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5) AT4G11960 420 / 2e-148 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT5G59400 67 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014135 [exp] 592 / 0 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5) Lus10040799 [exp] 66 / 3e-12 AT5G59400 316 / 3e-108 unknown protein Lus10016531 [exp] 64 / 2e-11 AT5G59400 311 / 2e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119200 [exp] 463 / 2e-165 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000 [exp] 462 / 4e-165 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5) Potri.009G032300 [exp] 75 / 3e-15 AT5G59400 343 / 8e-119 unknown protein Potri.001G241400 [exp] 68 / 6e-13 AT5G59400 357 / 2e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006710 pacid=23152205 polypeptide=Lus10006710 locus=Lus10006710.g ID=Lus10006710.BGIv1.0 annot-version=v1.0 ATGGCTAGCAAGTTCTCCATCAGTGTGACGTCTCCTCGGCTCTTCTCTGCTCCGATTCGCAAGCCTTTCGCTTCTACTGTGTCTTCCAAGGCTCAGCCGC TTGCTAACGGAGGAAGAAGACAAGTTGTTCCTGCCCGGAGAAGGGTTTTCTTGGTTCCCGTCAGGGCTACTGCTGATCAGCAAGGTCAGGTTCAGGAAGA TGAAGTAGTGGATGGAAAGATCCTGAACTACTGCAGCATAGACAAGAAGGACAAGAAATCAATGGGAGAAATGGAGCAGGAGTTCCTTCAAGCCCTACAA TCATTTTACTACGAAGGGAAAGCGATAATGTCCAACGAGGAATTCGACAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGTGTTGTTATGCTATCTG CTGATGAGCAGAGGTTCTTGGAAGCGTCAATGGCATATGTGGCTGGGAAACCAATTCTGAACGATCAAGAGTTTGATGAGCTTAAACTTAAGTTAAAGTC AGAAGGCAGTGATATTGTGGTTGAAGGTCCAAGATGCAGTCTCCGCAGTAAAAAGGTCTATAGCGACCTTTCTGTGGACTACCTCAAGATGCTTCTTCTG AATGTTCCAGCCACTGTTATTGCACTTGGTTTGTTCTTCTTCTTGGATGATGTGACCGAGTTCGAGATCACTTATCTTTTGGAACTACCGGAACCGTTCA GTTTCATCTTCACCTGGTTTGCTGCTGTGCCTCTCATAGTCTGGTCAGCTCTAACCCTTACAAACGCAATCATCAAGGATTTCACCATCCTCAAGGGCCC TTGTCCGAACTGTGGCACTGAAAACGTTTCGTTCTTCGGATCCATATTGACAATCTCCAGTGGCGGGACCACCAACAACCTCAAATGCTCGGACTGTGGA ACTCAGATGATCTATGATGCTCGTTCGCGGTTGATCACGCTGCCAGATTGA
AA sequence Show only first row Show all	>Lus10006710 pacid=23152205 polypeptide=Lus10006710 locus=Lus10006710.g ID=Lus10006710.BGIv1.0 annot-version=v1.0 MASKFSISVTSPRLFSAPIRKPFASTVSSKAQPLANGGRRQVVPARRRVFLVPVRATADQQGQVQEDEVVDGKILNYCSIDKKDKKSMGEMEQEFLQALQ SFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSADEQRFLEASMAYVAGKPILNDQEFDELKLKLKSEGSDIVVEGPRCSLRSKKVYSDLSVDYLKMLLL NVPATVIALGLFFFLDDVTEFEITYLLELPEPFSFIFTWFAAVPLIVWSALTLTNAIIKDFTILKGPCPNCGTENVSFFGSILTISSGGTTNNLKCSDCG TQMIYDARSRLITLPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	0	1
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	1.0	0.9732
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	2.0	0.9716
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	2.0	0.9589
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	2.4	0.9664
AT3G61870			unknown protein		Lus10010112 [exp]	3.9	0.9575
AT4G01150			unknown protein		Lus10010132 [exp]	5.9	0.9567
AT2G21960			unknown protein		Lus10005779 [exp]	6.0	0.9483
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	6.9	0.9500
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	6.9	0.9573
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	8.5	0.9448

Compare expression of checked genes

Lus10006710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.