Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11950 130 / 4e-35 Protein of unknown function (DUF1191) (.1) AT1G62981 124 / 1e-32 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT4G22900 117 / 2e-30 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014138 [exp] 406 / 3e-143 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10024479 [exp] 177 / 6e-53 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10002998 [exp] 175 / 2e-52 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 162 / 4e-48 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 159 / 2e-46 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 158 / 8e-46 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 150 / 1e-43 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 206 / 1e-64 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 192 / 3e-59 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 77 / 7e-16 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 69 / 6e-13 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 63 / 5e-11 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 62 / 8e-11 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10006712 pacid=23152210 polypeptide=Lus10006712 locus=Lus10006712.g ID=Lus10006712.BGIv1.0 annot-version=v1.0 ATGACCAACCTTTACTCACTCATCCTCCTCATAATTCTCCTCCCATTCTCATCACAATCAATCTCCGAAGAGGTCGGACCACTAGGTTCCCTGGATCAAC TTATCCGGGACCATGTCGCAATATTCGAGTCCAACGACGCGTTGACAAACATGTACAAAACAGGGGAGATCCACAGCATCGACCTCCCATCATCCAACTT CTCCGGGATCACGGCTCGTGGAGCGAGGTTCCGATGTGGCAGCTTGATGCGATACGGCGCACGAATCGATGAATTCGGGTTAGGGATCGGCGTAACGGTG TATCCATGTGTGGAGAGAGTGATGGTGGTCGCATACAACTTGGGTGTCAATCGGTCAGCATCAATATTCTACAACCTTGACTCTACCTCTGGCCACTACC AACTTGTATCGCCAATTGTAGGCCTTACAGCCTATAATTCCGACAAAAATGGTTCGAACCGATTCAAAATCGGAATCCGGTCTAGCCAAGGAAACCCATT AATCACCATCAACTTCAGCAACGTTACTAGTACAGCAACTCACACTGCCAAGTGTGCTAGCTTTAAGGAAGGTGGGAAATTCATCAGCCTGAAAGAACCC ATTTCGCCTCAAGTGTGTGGATCATCATCCAACGGCCATTATGGGTTGGTGGTCGGGATTCCGCCGGCGCCGGCGGGGGGCGGAGGAAGGGCGAAGGTGG CGGCGTGGAAAGTGGCGGTGGGGAGCACTGTGGGGGGTGTTTTGGGAATTGGGCTTTTGGGTTTGCTTGTGGTGGCTATGGTGGTGAAGGTGAAGAAGAA GGCAAGGATTTTGGAGATGGAGAGAAGGGCTTATGAAGAGGAAGCTCTGCAGGTTTCCATGGTTGGACATTTCAGAACTCCTCTGGCTTCTGCTACTCGA ACTCAACCCACCATTGACCATCCTCCTGTGAATACCTTGTAG
AA sequence Show only first row Show all	>Lus10006712 pacid=23152210 polypeptide=Lus10006712 locus=Lus10006712.g ID=Lus10006712.BGIv1.0 annot-version=v1.0 MTNLYSLILLIILLPFSSQSISEEVGPLGSLDQLIRDHVAIFESNDALTNMYKTGEIHSIDLPSSNFSGITARGARFRCGSLMRYGARIDEFGLGIGVTV YPCVERVMVVAYNLGVNRSASIFYNLDSTSGHYQLVSPIVGLTAYNSDKNGSNRFKIGIRSSQGNPLITINFSNVTSTATHTAKCASFKEGGKFISLKEP ISPQVCGSSSNGHYGLVVGIPPAPAGGGGRAKVAAWKVAVGSTVGGVLGIGLLGLLVVAMVVKVKKKARILEMERRAYEEEALQVSMVGHFRTPLASATR TQPTIDHPPVNTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11950			Protein of unknown function (D...		Lus10006712 [exp]	0	1
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	8.7	0.8703
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	8.9	0.8057
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	14.5	0.8622
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10040461 [exp]	15.1	0.8393
AT2G46890			Protein of unknown function (D...		Lus10009861 [exp]	22.9	0.8484
AT1G31460			unknown protein		Lus10033293 [exp]	29.3	0.7730
AT1G26140			unknown protein		Lus10017899 [exp]	30.9	0.8076
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	31.8	0.8431
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	31.9	0.8480
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10004522 [exp]	41.7	0.8391

Compare expression of checked genes

Lus10006712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.