Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11950 156 / 3e-45 Protein of unknown function (DUF1191) (.1) AT1G62981 156 / 6e-45 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT4G22900 147 / 1e-41 Protein of unknown function (DUF1191) (.1) AT3G08600 95 / 4e-22 Protein of unknown function (DUF1191) (.1) AT4G23720 59 / 1e-09 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014139 [exp] 390 / 2e-137 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 233 / 6e-75 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 228 / 4e-74 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10024479 [exp] 204 / 2e-63 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10002998 [exp] 178 / 2e-53 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 175 / 2e-52 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 171 / 7e-51 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 64 / 2e-11 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10028743 [exp] 59 / 1e-09 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 215 / 5e-68 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 205 / 2e-64 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 98 / 2e-23 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 95 / 3e-22 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 87 / 2e-19 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 83 / 4e-18 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 75 / 4e-15 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10006713 pacid=23152176 polypeptide=Lus10006713 locus=Lus10006713.g ID=Lus10006713.BGIv1.0 annot-version=v1.0 ATGGCTGCTGATCACTGCTCTTTCACCGTCATCATTATCATCGTTCTCCTCTCGTTGTCATCCTTGATAAAGAGTGACGATGAGATCAGAACGCCGGATG TCATGGATGAGATGATCAAGGACTACACATTCAAGTCACTTGGCACGATGAAGAGGAGGATCAGGACAGGGGAAATCTACAATGTGGACCTTCCCGGTAA CCTTTCAGGGATCAGGGCGAATGCAGCAAGGTTTCGGTGTGGTAGCTTGAGGAGATATGGCGTCCAGTTCGACGAATTCGGGTTAGGAGTTGGTTTATCC CTGAAGCCATGCTTGGTGAGAGTTCTGGTGATAGTACAGAGCTTGGGGCTCAATTGGTCATCTATCTACTCTGCAAATTACAACCTATCTGGTTATGAGC TTGCTTCGGAGATTCTCGGCCTTACTGCCTACGATTACAATGCCACGAGCATCATGATCGGCAGAAGCAGCAACGATTACCACCCTTTCGTGGTTGGTAT CCGTTCGAGCAAATTGAACCCCATCGCCATCAAATTCAGCAACACCACAAGTTACAACGACGATCACGACCCTGTATGTGCCATCTTTGAAAAAGACGGC ACAGTGAGGCTGACTCCCCCAATTTCGCCACGAGTATGCTGGTCAACAGCGGATGGACATTACGGGTTGGTGGTCAGGCAACAACCACCACCACCTGCTC ACAACCGAAGCAAGAAGAAGAAGGTAATGCGAGTAGTGGTGCTGGTTGTTTCCCTAGTTGTAATCGGACTTGTCGTGTTAGTCCTACTGGTGTGGACCTG TGTCAAGTACAAGGAAGGTGCCAAGATGGCTGAGCTGGAGAGGAATGCAGATGAAGGTGAGTATCTGCCTGTTTCACCGATCGGGAATGTTGGAGTACTT CCTGTTGCTGGATTCACTAGAACAGCTCCTGCTCTTGAGAATGAGGTTACGTTTTAG
AA sequence Show only first row Show all	>Lus10006713 pacid=23152176 polypeptide=Lus10006713 locus=Lus10006713.g ID=Lus10006713.BGIv1.0 annot-version=v1.0 MAADHCSFTVIIIIVLLSLSSLIKSDDEIRTPDVMDEMIKDYTFKSLGTMKRRIRTGEIYNVDLPGNLSGIRANAARFRCGSLRRYGVQFDEFGLGVGLS LKPCLVRVLVIVQSLGLNWSSIYSANYNLSGYELASEILGLTAYDYNATSIMIGRSSNDYHPFVVGIRSSKLNPIAIKFSNTTSYNDDHDPVCAIFEKDG TVRLTPPISPRVCWSTADGHYGLVVRQQPPPPAHNRSKKKKVMRVVVLVVSLVVIGLVVLVLLVWTCVKYKEGAKMAELERNADEGEYLPVSPIGNVGVL PVAGFTRTAPALENEVTF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11950			Protein of unknown function (D...		Lus10006713 [exp]	0	1
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	7.5	0.8039
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	12.5	0.7931
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	15.1	0.8137
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	19.9	0.8066
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	22.3	0.7360
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	23.5	0.7984
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	23.9	0.7503
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	26.0	0.7764
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	32.4	0.7863
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	32.9	0.7655

Compare expression of checked genes

Lus10006713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.