Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78760 60 / 1e-09 F-box/RNI-like superfamily protein (.1) AT3G59190 59 / 2e-09 F-box/RNI-like superfamily protein (.1) AT1G66300 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 58 / 7e-09 RNI-like superfamily protein (.1) AT5G18780 57 / 9e-09 F-box/RNI-like superfamily protein (.1.2) AT4G14096 57 / 1e-08 F-box/RNI-like superfamily protein (.1) AT3G59230 57 / 2e-08 RNI-like superfamily protein (.1) AT1G69630 57 / 2e-08 F-box/RNI-like superfamily protein (.1) AT5G02910 56 / 3e-08 F-box/RNI-like superfamily protein (.1.2) AT1G16930 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023042 [exp] 189 / 2e-56 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 191 / 1e-55 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10032432 [exp] 189 / 3e-55 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 175 / 2e-50 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10006318 [exp] 179 / 2e-49 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 176 / 2e-49 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 172 / 5e-49 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10029587 [exp] 171 / 6e-49 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006319 [exp] 165 / 4e-48 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 66 / 2e-11 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 57 / 2e-08 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 56 / 2e-08 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 56 / 2e-08 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 56 / 3e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104100 [exp] 56 / 3e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 55 / 6e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G121500 [exp] 52 / 5e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G024200 [exp] 50 / 3e-06 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G151700 [exp] 49 / 4e-06 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006714 pacid=23152175 polypeptide=Lus10006714 locus=Lus10006714.g ID=Lus10006714.BGIv1.0 annot-version=v1.0 ATGACCAAGAACAGGGAGAAGAGCAATAGCAGCAGGCAGCTATGGAGGACAGACAGAGGAGGAGTTGATGGAATAAGCAATCTCCCAGGCTCCATTATTT GCCACATCCTCTCCTTCCTCGACACCAAATCCTCCGTTCAAACTTGTTTATTGTCCAAGCAGTGGGAATGCTCCTGGAAACATGTTCCTTCCCTAAATCT GGAGCTGAAATTGGATCTATACAACAGGTACAAAAATTTCACTGACAAAGTGTTGTCCCTTCGCTATCCACTTCATGTTAGCAAGGTTTCATGGGTCGAA TATACGTGTTTTGCCCGTTCTGGTGGTTCGGAGTTTGCTCTGCTCAAAAAGGTCGTCAAATATGCAGTCTCTCATGGTGCTCAACATTTCAACCTACGAC CCATAAATCATAATCATTCCAACATCGCTCTTCTCGAGTTGTTTGATTCCATCTCTGACACTGTAAGAACCCTACAATTAGTATGGTTTGACCTCTATTG TCATCATGTTAGCAAGGTTTCATGGGTCGAATATACGTGTTTTGCCCGTTCTGGTGGTTCGGAGTTTGCTCTGCTCAAAAAGGTCGTCAAATATGCAGTC TCTCATGGTGCTCAACATTTCAACCTACGACCCATAAATCATAATCATTCCAACATCGCTCTTCTCGAGTTGTTTGATTCCATCTCTGACACTGTAAGAA CCCTACGATTAGTTCTCTTTGACCTCGTTTGTCAACCTAAACGTTCTGGATTCCGGTTGCTAACAAAGTTAGAACTGGTAGAAACTCGGATCACTACTGG TTTTGAGGTTGCTGAGCCATTTTATCAATTTCCCTGTTTGAATGATTTGGTCTTGAAATATTGCGTGTGGGTCGGTAACCATATTGATGCCGAACCTGTG GGATTGAGGGTGTCCGGACTCGGGTTGGTCAGGTTTAGCTTCTCAGATGCTGAGATCTCCAAGTTTGAATTATTTGCAACCAAACTCAAATCTTCCTGTC CCTTGTTCATGCTGTTATTGGAGATGAGTGGGAGATTGTTTTTGTTGAGGATGATTCTATTGACAATGAAGCATCTGGTTAACTTGTTCCGTTGTCTGCA TTACGTGGAATATCTGAAGATGGGCAATGAAATCAGCGAGGTTGACTCCCCAGAAGACATACCTTACAGGGCCATGAATAATTACTTCTTTAACGGATCT TCGAATGCAAGGCTAGATGTCTGGATTCGGGAAGAAGGGATTTGTGATCAAGTGGTAATGATGGCAGAAGTTCCAGATTCAGGAAGAAGGGATTTTTTAT CAAGTGGTGATGATTGA
AA sequence Show only first row Show all	>Lus10006714 pacid=23152175 polypeptide=Lus10006714 locus=Lus10006714.g ID=Lus10006714.BGIv1.0 annot-version=v1.0 MTKNREKSNSSRQLWRTDRGGVDGISNLPGSIICHILSFLDTKSSVQTCLLSKQWECSWKHVPSLNLELKLDLYNRYKNFTDKVLSLRYPLHVSKVSWVE YTCFARSGGSEFALLKKVVKYAVSHGAQHFNLRPINHNHSNIALLELFDSISDTVRTLQLVWFDLYCHHVSKVSWVEYTCFARSGGSEFALLKKVVKYAV SHGAQHFNLRPINHNHSNIALLELFDSISDTVRTLRLVLFDLVCQPKRSGFRLLTKLELVETRITTGFEVAEPFYQFPCLNDLVLKYCVWVGNHIDAEPV GLRVSGLGLVRFSFSDAEISKFELFATKLKSSCPLFMLLLEMSGRLFLLRMILLTMKHLVNLFRCLHYVEYLKMGNEISEVDSPEDIPYRAMNNYFFNGS SNARLDVWIREEGICDQVVMMAEVPDSGRRDFLSSGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78760			F-box/RNI-like superfamily pro...		Lus10006714 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	14.5	0.9202
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	15.7	0.9086
					Lus10031461 [exp]	27.4	0.8170
					Lus10008326 [exp]	28.8	0.9006
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	31.7	0.8917
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Lus10008767 [exp]	36.5	0.8915
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	37.7	0.8903
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	43.9	0.8885
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10012842 [exp]	44.2	0.8892
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10007280 [exp]	50.8	0.8879

Compare expression of checked genes

Lus10006714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.