Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22950 203 / 1e-65 MADS AGL19 AGAMOUS-like 19 (.1) AT4G11880 190 / 2e-60 MADS AGL14 AGAMOUS-like 14 (.1) AT2G45660 185 / 1e-58 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G62165 170 / 7e-53 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G18960 156 / 9e-47 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 153 / 7e-46 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 149 / 3e-44 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G51860 147 / 4e-44 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT5G51870 143 / 3e-42 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT1G24260 144 / 4e-42 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014143 [exp] 357 / 1e-125 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10006716 [exp] 213 / 3e-70 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1) Lus10014144 [exp] 211 / 3e-69 AT4G11880 155 / 4e-48 AGAMOUS-like 14 (.1) Lus10008264 [exp] 155 / 6e-46 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 154 / 9e-46 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10004638 [exp] 150 / 1e-44 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 148 / 3e-44 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10034663 [exp] 148 / 1e-43 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10031665 [exp] 144 / 2e-43 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112400 [exp] 219 / 3e-72 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.003G119700 [exp] 211 / 9e-69 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.002G151700 [exp] 209 / 6e-68 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074200 [exp] 207 / 4e-67 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.012G133000 [exp] 165 / 9e-51 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.011G075800 [exp] 152 / 2e-45 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 150 / 4e-45 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 151 / 5e-45 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G115500 [exp] 147 / 3e-43 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.002G109601 [exp] 146 / 3e-43 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10006715 pacid=23152187 polypeptide=Lus10006715 locus=Lus10006715.g ID=Lus10006715.BGIv1.0 annot-version=v1.0 ATGGCGAGAGGGAAGACTCAGATGAAGAGAATAGAGAACGCGACGAGCAGGCAAGTGACTTTTTCCAAGAGGAGAAATGGGCTGCTGAAGAAGGCGTTTG AGCTCTCTGTTCTCTGTGATGCTGAAGTTGCGCTCATCATTTTCTCCCCAAGAGGCAAACTTTATGAGTTCTCCAGCTCTAGTATCACCAAAACGATAGA GCGGTACGAGAAGAAGCATAAGGATATTGGACCAGGAAGCAAAGAGTTCGAAGATAACATGATTCAGGATAACGATGGCTTGAGCATGGAGAAGAAGATA GAGCAACTCGAAATATCAAAGAGGCAACTAATGGGAGAATGTTTGGAAGCATGTTCCACTGCTGAGCTCAGAAAGATAGAATGTCAGCTGGAGAGAAGCT TGAGTAGAATTAGGGCAAGAAAGAACCAGCTGTTTATGGATCAGATTGACAAGCTACGGGAAGAGGAGAAGATCTTGCTGGAAGAGAACAAAAAGCTGAG GGAAAAGTGTGGAGTGGAGCCATCAATGAAGCTATCAAGTTACAGCACGAAGGTGAAGCATCATCATCACAATCAACAACTGGACATAGTGGTTATAGCA GAAGAAGAAGATGGTGATGATGATGAAGAGAGTATGGAGGTTGAGACAGAGTTGTTCATAGGGCTAGCTGATCCTGCCAGAAGAAGATCAACAGCTAAAG CTAATTCCACCTCTCCTCCTGCTAGAATCATGACTCCTACTCCCTGA
AA sequence Show only first row Show all	>Lus10006715 pacid=23152187 polypeptide=Lus10006715 locus=Lus10006715.g ID=Lus10006715.BGIv1.0 annot-version=v1.0 MARGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSITKTIERYEKKHKDIGPGSKEFEDNMIQDNDGLSMEKKI EQLEISKRQLMGECLEACSTAELRKIECQLERSLSRIRARKNQLFMDQIDKLREEEKILLEENKKLREKCGVEPSMKLSSYSTKVKHHHHNQQLDIVVIA EEEDGDDDEESMEVETELFIGLADPARRRSTAKANSTSPPARIMTPTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	0	1
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	2.4	0.8953
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10014143 [exp]	2.8	0.9192
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10021940 [exp]	5.1	0.8654
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	6.3	0.8757
AT3G13480			unknown protein		Lus10010318 [exp]	7.7	0.8344
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	8.2	0.8919
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	10.6	0.8579
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	12.8	0.8838
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	13.2	0.8025
					Lus10025227 [exp]	13.6	0.8311

Compare expression of checked genes

Lus10006715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.