Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11860 295 / 8e-90 Protein of unknown function (DUF544) (.1) AT4G22960 137 / 3e-34 Protein of unknown function (DUF544) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014145 [exp] 835 / 0 AT4G22960 167 / 4e-44 Protein of unknown function (DUF544) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119800 [exp] 331 / 7e-103 AT4G11860 575 / 0.0 Protein of unknown function (DUF544) (.1) Potri.001G112300 [exp] 322 / 3e-99 AT4G11860 603 / 0.0 Protein of unknown function (DUF544) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04424 [flax] [poplar] MINDY_DUB MINDY deubiquitinase
Representative CDS sequence Show only first row Show all	>Lus10006717 pacid=23152200 polypeptide=Lus10006717 locus=Lus10006717.g ID=Lus10006717.BGIv1.0 annot-version=v1.0 ATGGATTCACCCTCCCTTCCTTCGCCGTCTCCTCCGCCGTCGCAAGCTCCCCCCGCATCTCCGTCTATCACCACCGTCTCCGCCGGAGACGATCAGCAGC AGCAAGACCAACCGCAGCAGCAGCAGAATCAGAATCAAGCGGCAGCTGAAGAGAAAGAGTGCCTGCACAAGACCAAAACGGTACAGTTCTTGGGCCGCAC AACGCCGATCATCCTCCAGAACGACAATGGACCTTGTCCTCTCCTCGCTATCTGTAATGTGCTGCTGTTAAGGAACCATATAACCTTGAGCCCTGATGTT TCTGAAGTCTCACAAGAAAAGCTGCTCTCGCTTGTTGCAGAACGGTTGATTGATTCCAACAGTAACATTGATAATAAAGATGCAGGTTATGTGGAGAATC AACAACAGAATATTGCAGATGCTATAGATTTGCTTCCCAGGCTGGCCACTGGAATTGATGTTAATATAAAATTTACGAGGATAAATGATTTTGAGTTCAC CCGTGAATGTGCCATATTTGATCTGCTTGACATTCCTTTGTATCATGGCTGGATTGTTGATCCTCAGGACAGTGATACAGCTAATGCTATTGCGTCAAAA TCTTATAATTCTATCATGGGAGACCTTGTTGCCTTGGAAACACAAAAGATGGAGGATGATAAAAGTAGAGATAATGTAGGAGATGACTCTGTAGATTTTG CTGCTGCTACCACTGCAGTCCTGGGTGTTCCTTCTCCTTCACTTTCAAGTAGATCTTTTGACTCTCCTCGTTCTGACAGTGATGATAGTAAGATGATGAA AGGAGACCGGGAGGAAGAAGCTGAACTACAGAGAGCCTTGCGATTGTCTGAAACAGGACAGCAATCTGCAGATGGTCGTTATATTTTGACAGCTAATGCA AACAATGAACTTATATCTTTCGATCAAGTTGAAGGTCCATCTTCCCAAGGAAGTCTTCCTATGGCTGTTTCAGAGCAGCAAATTGTTACCGATGATAGTA ATGGTTCATCGAGTAACGGTAACTGCACGTCAACTGAGGAAATCTTATTTCGCCCCTTGCAAGCTGATCAAATTAACTACGTGCAACAGTCTGTTTTTCC AGATCTTGGAGAATCTCAGTTGTCCAATACTGAGCCAGGTGTTGGAGTCCCTGGTGATGGTTTGAATCAGAAGAATGATATTAAGCCAGGTGTGGCAGAA GATGCGGTGCCTCTTTCTCCAAGAAAAATAGATGTTCCTGTATTGGAACACTCTGCAGATACATCGCCCAGTGAGAAGGTTGAGAATCAATTTGGTTCTG GACTTCACATCGATGGACAAACAGAGTTGAGTGGCCTTGGCTCTGATGAGTTGTTACGTGTATCTCCATCAAATCCTAGAACAGATTCATCAATTGGGTT AACGCAAAATGTGGATGTAAGTGAACCTTATTCTCCAAGTGTTGATGGTAGTGAACCAATATATGAGGGAGAAGAATGTATACTAGATTCAGGAACTCCA AAATTTGAAGATGGGGAGCCTGTGTATGAGGGTGAGGCTATTCTGGCTGAACAAGGTGATAAATCAGTAGGATCCAAGGATGAACTCTCTCCACAACAAG GGGAGCTAATAAGGAACTTTTTGAAGAACAGTGCCAACCAGTTGACCTTCTATGGCCTTTTCTGCTTGCAAGAAGGGCTTAAAGAGCGTGAACTTTGTGT CTTTTTCCGGAATAACCACTTCAGCACCATGTTTAAGTTTAAAGGTGAGCTTTATCTCCTAGCTACTGACCAGGGTTATCTGAACCAGCATGATTTGGTG TGGGAGAAGCTCAATGAGGTCAATGGCGATACTTTGTTCATGACATACAATTTCAGGGAATTCAAGGTGGAAAGTCCCAGAACTGAAACTTGGGATGAGC AGAATGTCTTGGCTAGTACCGCGGATTATCTCGCGGCCATCAACACGGCTTCTCAGGACAGTGGCATTAACTCTGATCTCCAACTTGCAATCGCTCTGCA ACAACAGGAGTTCGAACAGCAGCAGTCTCAACGCAACAATCCGCAACCACCACCACCACCACCTTCTAGCGGAAACGAGCAGAGACTGGTAACTGGTCCA ACGGCTCCGAGAACGGGGACTAGAACTCCAACATCGTCGAGGGCGGAACCGAAATCCAAAGACAAAGACAAATGTATTGTGATGTGA
AA sequence Show only first row Show all	>Lus10006717 pacid=23152200 polypeptide=Lus10006717 locus=Lus10006717.g ID=Lus10006717.BGIv1.0 annot-version=v1.0 MDSPSLPSPSPPPSQAPPASPSITTVSAGDDQQQQDQPQQQQNQNQAAAEEKECLHKTKTVQFLGRTTPIILQNDNGPCPLLAICNVLLLRNHITLSPDV SEVSQEKLLSLVAERLIDSNSNIDNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFTRINDFEFTRECAIFDLLDIPLYHGWIVDPQDSDTANAIASK SYNSIMGDLVALETQKMEDDKSRDNVGDDSVDFAAATTAVLGVPSPSLSSRSFDSPRSDSDDSKMMKGDREEEAELQRALRLSETGQQSADGRYILTANA NNELISFDQVEGPSSQGSLPMAVSEQQIVTDDSNGSSSNGNCTSTEEILFRPLQADQINYVQQSVFPDLGESQLSNTEPGVGVPGDGLNQKNDIKPGVAE DAVPLSPRKIDVPVLEHSADTSPSEKVENQFGSGLHIDGQTELSGLGSDELLRVSPSNPRTDSSIGLTQNVDVSEPYSPSVDGSEPIYEGEECILDSGTP KFEDGEPVYEGEAILAEQGDKSVGSKDELSPQQGELIRNFLKNSANQLTFYGLFCLQEGLKERELCVFFRNNHFSTMFKFKGELYLLATDQGYLNQHDLV WEKLNEVNGDTLFMTYNFREFKVESPRTETWDEQNVLASTADYLAAINTASQDSGINSDLQLAIALQQQEFEQQQSQRNNPQPPPPPPSSGNEQRLVTGP TAPRTGTRTPTSSRAEPKSKDKDKCIVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	0	1
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	1.0	0.8555
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	2.0	0.8373
AT1G63500			Protein kinase protein with te...		Lus10001998 [exp]	4.6	0.8393
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	6.3	0.8457
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	6.5	0.8293
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	8.1	0.7861
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	11.6	0.8318
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	15.1	0.8021
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	15.5	0.8295
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	20.3	0.8048

Compare expression of checked genes

Lus10006717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.