Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 1202 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11850 1185 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 1156 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G00240 1135 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 1130 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 812 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT3G15730 668 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 663 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 636 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 512 / 3e-170 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014146 [exp] 1624 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10026375 [exp] 1205 / 0 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 1183 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 1170 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10042282 [exp] 990 / 0 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10026377 [exp] 882 / 0 AT2G42010 838 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 862 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 861 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 802 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112100 [exp] 1292 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 1201 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 1184 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 876 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 855 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 854 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 799 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 798 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.006G253900 [exp] 674 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 663 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10006718 pacid=23152185 polypeptide=Lus10006718 locus=Lus10006718.g ID=Lus10006718.BGIv1.0 annot-version=v1.0 ATGGCAAGCAGTGTGATCCCACACACGAGCTCATTCGGCGGCTCGGTCCACGGCCAAGCCACCCAGCTGGTCCCTTTCAAAACCAGCAGCAAAGGGAATC TCAGGCATCTTCTGCTCCACGGGAATCTGGACATATGGGTCAAAGAAGCGAAGAACCTCCCCAATTTAGACATGTTCCACAAGACCATTGGAGACATGTT CTCAATCCTTCCGATCAAAGGAGGAAGTGGCGGGTCAAAGATTACCAGCGATCCTTACGTCACCGTTTCGATCGCCGGCGCGGTGATCGCCAGGACTTTC GTCATCAACAACAGCGAGAACCCTGTCTGGATGCAGCATTTCAGTGTTCCGGTGGCGCATTCCGCCGCCGAGGTCCACTTCGTTGCTAAAGACAACGATG TTGTCGGTTCCCAGGTGATGGGAGCAGTGGGGATACCGGTGGAGGAGCTCTGCTCCGGAAAGAAGATCGAAGGGTCGTTTCCCATCCTGGGTCCGAACGG GAAGCCATGCAAAGAAGGTGCAGTGCTGACATTGTCGATTCAGTTCATCCCAATTGAACAAATGGAGATTTACAGGTTTGGTGTGAGGTCTAGAGGGGAC TACAATGGCGTCCCGGGGACTTATTTCCCTATGCGAAAAGGCGGTAAGGTGAATCTCTATCAGGATGCTCATGTTCAGGAAGGCTGCCTTCCTGAACTGG GTCACTATGAGCATAGAAGCTGCTGGGATGATATATTTCAGGCAATCAGTCAGGCTAGGAGGCTGGTTTACATAACTGGATGGTCGGTTAATTACAATGT TCGGTTGGTTCGGAATGGGAACCCGGCTACGGATTGTACGTTGGGGGAGCTTCTGAAGACCAAGTCCCAGGAAGGTGTCAGGGTTTTGCTCCTCGTTTGG GATGATCCTACTTCCAGAAGTATTCTGGGTTACAAAACTGAAGGAGTGATGAACACTGGAGACGAGGAAACTCGCCGATTTTTCAAGCATTCGTCTGTGC AAGTTCTGCTTTGTCCGAGGTCTGCTGGGAAAGGACACAGTTTCATCAAGAAGCAGGAAGTGGGAACAATCTACACGCATCATCAAAAGACAGTGATAGT AGACGGTGATGCAGGACAGAATCGACGAAAGATCGTAGCTTTCGTTGGCGGACTCGATCTGTGCAATGGCCGGTACGATACTCAGGATCACTCCCTCTTC AGAACTTCTCAAACCGTCCACAAAGAGGATTTCCACAACCCAACTTTCTTGGACCCAACTGGATGTCCAAGAGAGCCATGGCATGATATGCACAGCAAGA TCGAAGGTCCAGCAGCTTACGACGTCCTCACCAACTTCGAAGAGCGATGGTTACGAGCCTCGAAGCCTCGTGGAATCCAGAAACTGAAATCTTCATTAGA CGATGCATTGCTGAAGCTCGAGAGAATTCCTGAATTCCTTGGAATCTCAGAAGTCATTGGCCTCACTGAGCATGATCCTGAGGCCTGGAATGTGCAGGTC TTCAGGTCAATAGATTCAACATCAGTGAAAGGATTTCCTGACGAACCAAGAGCTGCAACAACCAAAAATCTGCTATGCGGCAAGAACATCCTGATAGACA TGAGCATCCATGCTGCGTACGTGAAGGCGATCCGAGCAGCGCAGAACTTCATCTACATAGAGAACCAGTACTTCCTGGGATCATCCTACAACTGGGATTC CTACAAAGACTTGGGAGCCAACAACTTGATCCCTATGGAGATAGCCCTGAAGATCGCCGAGAAGATCAGGGCGAAAGAGCGGTTCGCTGCGTACATACTC GTCCCGATGTGGCCTGAAGGAGTTCCGACGAGCTCCCCAACGCAGAGAATCCTATTCTGGCTGCAGAAGACGATGCAGATGATGTATGAGATCATTTATA AGGCCTTGGTTGAGGTTGGTCTTGACACCAAGGATGAGCCTCAGGACTATCTTAACTTCTTTTGCCTCGGAAATCGCGAGGCACCCGATGGTAACCATGC TTCTGCAGCGTTGATTCCACAGACGTCCGGTTCGTCGTCCAAGTCGAATGCTGCAGCTAACACTCCTCAGGCACTCAGTCAGAGGAGCAGGCGGTTCATG ATCTACATCCACTCGAAAGGGATGATAGTCGACGACGAATACGTGATCATCGGATCGGCTAACATCAACCAAAGATCGTTGGAAGGCACTCGCGACACCG AGATCGCGATGGGAGCATATCAACCCAAGCACACCCTGACAACAACAAAACGGCCCCTCGGACAGGTATATGGGTACAGGAAATCGTTGTGGGCGGAGCA CGTGGGAGGGGTGCTGGAGGAATGTTTCGAGAAGCCGGAGAGCGTCGAATGCGTGAGGCGGGTGAGGGCGATCGGGGAGCAGAACTGGCGGCAGTTTGCG GCGGAGACGGTGACGGAGATGAAGGGTCATCTGCTGAAGTATCCGGTGGAGGTGGATCCTACGGGGAAAGTGAGGGCACTTCCGGGATGTGCAACTTTTC CCGACGTCGGCGGCAACATTTTGGGCTCGTTCATTGCCATTCAGGAAAATCTCACCATCTGA
AA sequence Show only first row Show all	>Lus10006718 pacid=23152185 polypeptide=Lus10006718 locus=Lus10006718.g ID=Lus10006718.BGIv1.0 annot-version=v1.0 MASSVIPHTSSFGGSVHGQATQLVPFKTSSKGNLRHLLLHGNLDIWVKEAKNLPNLDMFHKTIGDMFSILPIKGGSGGSKITSDPYVTVSIAGAVIARTF VINNSENPVWMQHFSVPVAHSAAEVHFVAKDNDVVGSQVMGAVGIPVEELCSGKKIEGSFPILGPNGKPCKEGAVLTLSIQFIPIEQMEIYRFGVRSRGD YNGVPGTYFPMRKGGKVNLYQDAHVQEGCLPELGHYEHRSCWDDIFQAISQARRLVYITGWSVNYNVRLVRNGNPATDCTLGELLKTKSQEGVRVLLLVW DDPTSRSILGYKTEGVMNTGDEETRRFFKHSSVQVLLCPRSAGKGHSFIKKQEVGTIYTHHQKTVIVDGDAGQNRRKIVAFVGGLDLCNGRYDTQDHSLF RTSQTVHKEDFHNPTFLDPTGCPREPWHDMHSKIEGPAAYDVLTNFEERWLRASKPRGIQKLKSSLDDALLKLERIPEFLGISEVIGLTEHDPEAWNVQV FRSIDSTSVKGFPDEPRAATTKNLLCGKNILIDMSIHAAYVKAIRAAQNFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIAEKIRAKERFAAYIL VPMWPEGVPTSSPTQRILFWLQKTMQMMYEIIYKALVEVGLDTKDEPQDYLNFFCLGNREAPDGNHASAALIPQTSGSSSKSNAAANTPQALSQRSRRFM IYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPKHTLTTTKRPLGQVYGYRKSLWAEHVGGVLEECFEKPESVECVRRVRAIGEQNWRQFA AETVTEMKGHLLKYPVEVDPTGKVRALPGCATFPDVGGNILGSFIAIQENLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	0	1
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	6.4	0.9815
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	7.1	0.9787
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	8.3	0.9797
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	9.0	0.9766
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	10.6	0.9642
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	11.5	0.9805
AT3G48180			unknown protein		Lus10043469 [exp]	15.2	0.9778
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	15.4	0.9797
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	16.6	0.9754
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	17.9	0.9748

Compare expression of checked genes

Lus10006718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.