Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63000 531 / 0 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT1G78570 522 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 474 / 5e-165 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 464 / 2e-161 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT5G59290 46 / 2e-05 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 42 / 0.0003 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 41 / 0.0008 UXS6 UDP-XYL synthase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014147 [exp] 617 / 0 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10005560 [exp] 509 / 3e-179 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 508 / 8e-179 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 502 / 6e-176 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 500 / 2e-175 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 472 / 2e-164 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 333 / 3e-110 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 319 / 5e-105 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10031389 [exp] 80 / 7e-19 AT1G78570 84 / 2e-20 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112000 [exp] 549 / 0 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.003G120000 [exp] 549 / 0 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.001G383500 [exp] 507 / 6e-178 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 502 / 4e-176 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 501 / 9e-176 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.008G053100 [exp] 42 / 0.0003 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 42 / 0.0004 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.010G207200 [exp] 41 / 0.0006 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04321 [flax] [poplar] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Lus10006719 pacid=23152170 polypeptide=Lus10006719 locus=Lus10006719.g ID=Lus10006719.BGIv1.0 annot-version=v1.0 ATGGGTTTCCCGGCAAACGGCAAAGAATCCGGCCCGCTCAAGTTCCTCATCTACGGCCGTACAGGCTGGATAGGGGGGCTCCTGGGCAAAATCTGCGAGT CTCAGGGCATCGAGTACGTCTACGGCTCCGGCCGCCTCGAGAACCGCAGCTCCCTCGAGGAAGACATCGCCACCGTCAAGCCGACGCACGTCTTCAACGC TGCCGGCGTCACGGGGCGTCCCAACGTCGACTGGTGCGAGTCCCACAAGGTGGAGACCATCAGGACCAATGTCGTCGGAACTCTAACGCTGGCAGATGTC TGCCGGGAGAAAGGTCTGGTAATGGTTAATTACGCCACCGGTTGTATCTTCGAGTACGATGAGAAGCACCCGCTCGGTTCGGGAGTCGGGTTCAAGGAGG AGGATACTCCCAACTTCACCGGATCTTATTACTCCAAGACCAAGGCTATGGTGGAGGACTTGCTGAAGAACTACGAGAACGTCTGCACGCTGCGTGTTAG AATGCCGATCTCATCAGACTTGAACAATCCACGTAACTTCATCACAAAGATCGCTAGGTACGACAAGGTCGTGAATATTCCGAACTCGATGACAATCTTG GACGAACTCCTCCCCATCTCGGTCGAGATGGCTAAGAGGAACCTCACTGGAATCTGGAACTTCACCAACCCTGGAGTGGTGAGTCACAATGAGATACTGG AGATGTACAGGGACTACATCAACCCCAACTTCACATGGAAAAACTTCAACCTCGAGGAGCAAGCTAAAGTGATCGTTGCGCCGAGGAGCAACAATGAGAT GGACGGTGCGAAACTGAAGAAGGAATTCCCCGAGCTGCTGTCGATAAAGGAATCCCTCATCAAGTACGTGTTCAAGCCCAACCAGAAGACTGCTGCTGCT TGA
AA sequence Show only first row Show all	>Lus10006719 pacid=23152170 polypeptide=Lus10006719 locus=Lus10006719.g ID=Lus10006719.BGIv1.0 annot-version=v1.0 MGFPANGKESGPLKFLIYGRTGWIGGLLGKICESQGIEYVYGSGRLENRSSLEEDIATVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADV CREKGLVMVNYATGCIFEYDEKHPLGSGVGFKEEDTPNFTGSYYSKTKAMVEDLLKNYENVCTLRVRMPISSDLNNPRNFITKIARYDKVVNIPNSMTIL DELLPISVEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYINPNFTWKNFNLEEQAKVIVAPRSNNEMDGAKLKKEFPELLSIKESLIKYVFKPNQKTAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	0	1
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	1.4	0.9476
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	2.4	0.9439
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	2.4	0.9402
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	3.9	0.9393
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	4.5	0.9398
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	4.6	0.9347
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	4.9	0.9371
AT3G16200			unknown protein		Lus10006829 [exp]	6.0	0.9301
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	8.0	0.9318
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	8.4	0.9279

Compare expression of checked genes

Lus10006719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.