Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05680 332 / 5e-110 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43820 323 / 8e-107 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05675 321 / 6e-106 UDP-Glycosyltransferase superfamily protein (.1) AT2G43840 312 / 2e-102 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G31750 291 / 4e-94 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 290 / 9e-94 UDP-Glycosyltransferase superfamily protein (.1) AT1G24100 276 / 2e-88 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15480 230 / 2e-70 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 214 / 3e-64 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 208 / 6e-62 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006352 [exp] 650 / 0 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006351 [exp] 517 / 0 AT1G05680 315 / 9e-106 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006353 [exp] 463 / 3e-161 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10024486 [exp] 446 / 1e-154 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10014148 [exp] 445 / 2e-154 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10008742 [exp] 440 / 2e-152 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10017825 [exp] 427 / 5e-147 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020556 [exp] 336 / 1e-111 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 333 / 1e-110 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175000 [exp] 409 / 4e-140 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 366 / 2e-123 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G389200 [exp] 363 / 7e-122 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 362 / 1e-121 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 355 / 6e-119 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 353 / 2e-118 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 353 / 2e-118 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140500 [exp] 353 / 2e-118 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140300 [exp] 352 / 5e-118 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G117200 [exp] 345 / 3e-115 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10006721 pacid=23152212 polypeptide=Lus10006721 locus=Lus10006721.g ID=Lus10006721.BGIv1.0 annot-version=v1.0 ATGCTCCAATTCTCCAAACGCCTGATCCCCAAAGGCATCAAAGTCACTCTGGTCCTCACCCGTTTCATCTCCAACACCATCACCTCCACCTCCGCCGCCT CGAACATCAACATCGCCACCATCTCCGACGGCTTCGACGACGGAGGAATGGACGCCGCGGGGAGCCCGGGAGTCTTCCTGGCCACATTCCGGGAAGTGGG TTCGGAGACTCTGGCTCGGCTAATCGAAAAATTCAGCGACGCAGGGGACCCTGTACACTGCGTCGCGTACGACCACTGCATTCGTTGGTGTCTGGACGTT GCGAAGAGGTTCGGGTTGGTCGGGGCGGCGTTCTTGACGCAGTCGTGCGCTGTGGACTGTGTTTATAAGCTTGTTCATGATGGAGTTATCAAGCAGCCAC CGGTGAAGGAAAAGGATGGGGTTTTGAGGTTAGAAGGGTTACCGCCGCTGACGGCAGGGGGGGATCTGCCGTCTTTTGTGTCGGATGTTGGTAGTTACCC CGGCATTCGGGATGCGCTTGTCGGGCAGTTCGAGAATATGGAGGATGCTGATTGGGTGCTCTGTAATTCTGTTTACCAGCTGGAGCATGAGGCATCAGAC TGGTTATCAAAGAAGGTACCAAACTTCATAACAATCGGACCAACAATCCCTTCGATGTACCTAGACAAGCAACTCCAAGACGACGTGGATTACGGGTTCA GCATCTTCAAGCCCATCAACGAGCCCATCAAGAACTGGCTATCAAACAAGCCCAAAAACTCAGTAGTCTACGTCTCATTCGGGAGCCTAGCAGCCCTACC CCAGGCCCAAATGGAGGAGCTCTATCATGGTCTCAACAACTCAAACCAATACTTTCTTTGGGTAGTTCGGAAAACCGAAGAGGACAAACTCTCCCAAAAG CGTGTCTCCCCAAAGGGTCTCATAGTGTGGTGGTGCCCGCAGCTGGAAGTGCTCGCTAGCCCGTCTGTGGGGTGCTTCGTTACGCATTGTGGGTGGAACT CGACGCTAGAGGCTGTGAGCATGGGAGTGCCCATGGTGGCGATGCCTCAGTGGACGGACCAGCCTACTAATGCTAAGTTCATAAGGGATGTTTGGAGGGT GGGAGTGAAGGTTGAAGGTGATGGTGGGTTGGTGAGAAGGGAAGAGATCGAGAGGTGTGTGAAGGAAGTGATGGAAGGTGAGAAAGGAGAAGAGATGAGG AGGAATTGCGAGAAGTTTGGGGAGCTGGTGAAGGATGCTGCGAGTGAAGGTGGGAGTTCGGATGGGAATATTCGTCGGTTTGCTAGTAGTTTGATTCGAA CCGTGAAGTCTTGA
AA sequence Show only first row Show all	>Lus10006721 pacid=23152212 polypeptide=Lus10006721 locus=Lus10006721.g ID=Lus10006721.BGIv1.0 annot-version=v1.0 MLQFSKRLIPKGIKVTLVLTRFISNTITSTSAASNINIATISDGFDDGGMDAAGSPGVFLATFREVGSETLARLIEKFSDAGDPVHCVAYDHCIRWCLDV AKRFGLVGAAFLTQSCAVDCVYKLVHDGVIKQPPVKEKDGVLRLEGLPPLTAGGDLPSFVSDVGSYPGIRDALVGQFENMEDADWVLCNSVYQLEHEASD WLSKKVPNFITIGPTIPSMYLDKQLQDDVDYGFSIFKPINEPIKNWLSNKPKNSVVYVSFGSLAALPQAQMEELYHGLNNSNQYFLWVVRKTEEDKLSQK RVSPKGLIVWWCPQLEVLASPSVGCFVTHCGWNSTLEAVSMGVPMVAMPQWTDQPTNAKFIRDVWRVGVKVEGDGGLVRREEIERCVKEVMEGEKGEEMR RNCEKFGELVKDAASEGGSSDGNIRRFASSLIRTVKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	0	1
					Lus10002449 [exp]	2.4	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	3.2	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	3.5	1.0000
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	4.5	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	4.6	1.0000
					Lus10002009 [exp]	5.1	1.0000
AT1G76250			unknown protein		Lus10008273 [exp]	5.7	1.0000
					Lus10009191 [exp]	5.8	1.0000
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10018131 [exp]	6.2	1.0000
					Lus10039663 [exp]	6.9	1.0000

Compare expression of checked genes

Lus10006721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.