Lus10006722 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07200 475 / 2e-168 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
AT1G60980 474 / 6e-168 ATGA20OX4 gibberellin 20-oxidase 4 (.1)
AT4G25420 469 / 3e-166 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT5G51810 462 / 4e-163 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1)
AT1G44090 332 / 3e-112 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1)
AT5G05600 198 / 5e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT3G11180 191 / 7e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
AT5G24530 180 / 2e-53 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT3G19010 176 / 1e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
AT1G15550 169 / 4e-49 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006350 704 / 0 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10015016 603 / 0 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10027399 576 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10031671 569 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Lus10041390 456 / 7e-161 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1)
Lus10036539 447 / 3e-157 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1)
Lus10038894 422 / 3e-147 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1)
Lus10004808 182 / 6e-54 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10030185 179 / 4e-53 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G134600 518 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1)
Potri.012G132400 510 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1)
Potri.002G151300 494 / 6e-176 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.014G073700 480 / 2e-170 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.007G103800 390 / 6e-135 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1)
Potri.005G065400 376 / 2e-129 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1)
Potri.005G184200 362 / 2e-124 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1)
Potri.005G184400 362 / 3e-124 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1)
Potri.012G006300 196 / 1e-59 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.011G150100 191 / 1e-57 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF03171 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence
>Lus10006722 pacid=23152182 polypeptide=Lus10006722 locus=Lus10006722.g ID=Lus10006722.BGIv1.0 annot-version=v1.0
ATGGACACTGTGAAATCACCATCACCGACAATGGCACCCATTCGACCCAACTCCTTGGTCTTCGACGCCAACTTACTCAACGACGGCTCGTCCAAAATTC
CCGAGCAGTTCGTGTGGCCTGACCACGAGAAGCCTCAGGGAAATGCTCCGGAGCTCGACGTCCCTGTGATCGACCTGGCCGGATTCTTTTCCGGGGACCC
AGCTGCCGCCACCGAGGCGGCGACCCTCGCCGGTGAGGCATGCAGGAGGCACGGGTTCTTCCTCGTCGTCAACCACGGCGTTGACGGTCGTCTCCTCTCC
GGCGTCCATGAGTACCTGGACAGCTTCTTCGGGTTGCCGCCTTTGGAGAAGCAGAAGGCACAGAGGAAGCTCGGCGAGAGCGTCGGCTACGCCGGTAGCT
TCCTCGGCAGATTCTCCTCCAAGCTCCCCTGGAAGGAAACGCTGTCGCTTCGCTTCAATGCCGCGAAAGATTCCCCTAAGACCGTTAGAGATTATCTCGT
CAACACGATGGGTCAAGATTTCTCTGATTTCGGGAATGTGTACCAAGAGTACTGCGAGACGATGAGTAAGTTGTCGCTTAGGATCATGGAGCTATTGGGG
ACGAGCTTAGGGGTGAAGAACAGAGGGCATTTCAGGGATTTTTTCCATGACAACGATTCGATAATGAGGCTGAACTATTACCCGACGTGCCAGAAACCTG
AAGCTACCTTGGGAACGGGGCCTCATTGTGATCCGACGTCGTTGACGATCCTGCACCAGGACCAAGTGGCCGGGTTGCAAGTGTTTGTGGACGACGAGTG
GCGCTCTATCAACCCCCATCCCGACGCCTTTGTCGTCAACATTGGTGACACTTTCATGGCGATGTCGAACGGGCAATTCAAGAGCTGTTTGCACAGAGCA
GTGGTGAACAGGACGACGGCGAGGAAGTCGTTGGCGTTCTTCCTGTGTCCGAAGAGCGACAAGGTAGTGTCGCCGCCGGAGGAGCTGGTGGACGAGGAAA
ATCCAAGGATGTACCCGGATTTCACATGGGCGATGTTCGTAGAGTTCACCCAAAAGCACTATAGATCCGACATGAACACCCTCGAGGTCTTCAAGACCTG
GCTTCAAGATCAGCAGCATACCAACTTAAAGTAA
AA sequence
>Lus10006722 pacid=23152182 polypeptide=Lus10006722 locus=Lus10006722.g ID=Lus10006722.BGIv1.0 annot-version=v1.0
MDTVKSPSPTMAPIRPNSLVFDANLLNDGSSKIPEQFVWPDHEKPQGNAPELDVPVIDLAGFFSGDPAAATEAATLAGEACRRHGFFLVVNHGVDGRLLS
GVHEYLDSFFGLPPLEKQKAQRKLGESVGYAGSFLGRFSSKLPWKETLSLRFNAAKDSPKTVRDYLVNTMGQDFSDFGNVYQEYCETMSKLSLRIMELLG
TSLGVKNRGHFRDFFHDNDSIMRLNYYPTCQKPEATLGTGPHCDPTSLTILHQDQVAGLQVFVDDEWRSINPHPDAFVVNIGDTFMAMSNGQFKSCLHRA
VVNRTTARKSLAFFLCPKSDKVVSPPEELVDEENPRMYPDFTWAMFVEFTQKHYRSDMNTLEVFKTWLQDQQHTNLK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60980 ATGA20OX4 gibberellin 20-oxidase 4 (.1) Lus10006722 0 1

Lus10006722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.