Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006724 pacid=23163543 polypeptide=Lus10006724 locus=Lus10006724.g ID=Lus10006724.BGIv1.0 annot-version=v1.0 ATGTCTGACATAGGCTCCTCTGAAGTTACAGATGCAGCAGCTATAACAGGTTCTGGTGGAGGGACGACCACAACAGAGATCTTTGAACAACGCACTACAA ACACTAACCCAACACATTCGAGGGCAGGTTCAGTCCTGGATGACCTAGAATCTCAGGCTTCAGGGGCAGGTCAAGTGAAACGTGCTTACCTAGCATTGTG GACAGCATCTTCAGACGATGGAGCTGACATTAAGGTGCCGATTCCGTATTTCATGAAGCTATACACTGATTGTGCGGCCATCCTAGCCTGCATGGCCGTC GCTGGCTTCTGGTATGCAGCAGGTAATACTGGTGCTGGAAAAGATCTCCTCAAAATCTCTAGGGGTGCACTATCAGCTTCATATTGCTTTCTTGCATTGC TAGCACTTTGCCCTCTGTATCTATCCTTTGTTTACCTTAGAGCGAAGTCCGATAATTGGTTGGTAGAGGATCCTCCATTATGGCTGAAATTTTTCGTCAC CGGTCCGGGAACGCTAGGCTTGCTATATGTAGGGAATATGCAATTCACGGAAAAATCCGATTGGGCTACATACGTAATTTTGTGCGGTTATTTGTATGCG GTCTTGATCGTGAGGATCATCAAGCCAGGATATGATTTCTCTATCCAAGAAGGCTTCATGGGGATGGTGGCGACGAAGGTTTACTCGTTACAGGATGTTC CTGCCGAGGAGCTGTCGACAACACGAAAGATCATATGCTACGTAGGAGTAGCCGTTGTCGTTCACTTCCTACATGCTGTTAAATTGAGCTTTGAGATGAA AGAAGCAGATTTGAGAAACTACAAAACTGAGCAGCAACTTAAGCTTTTGAAGGGAAGCCACACAGTGCTTATAGATAGGTTCAATAGGGCTGTTGGAGGA TGGAACAAACATGTGGACGAGGCAAATGACCTTGAAACACAAGTCAATGCTCTCAGGACCGAGAATGGCAATCTCCAGACCAGGATTAGTAATCTCTCCG ATAAGAATAGGATTCTCTTAGATCAAAATGAGACTCTCATAACCGAGAATATAACTCTCTCGGTTGAGAAGAGTACTCTCATAGACAATAATGGCGATCT CAAGGCAGCGAATAACGCTCTCAGTATCGAGAAGGATATTCTCGTAAATCAGAAAGGAAATCTTGAGATTGAGATTGCAAATCTCAATATCCAGATTAAG GAATTGAATGAGAAAGTGAAGGCCAAAGAAAAAGCTTATACTGCTGAGATTAACGAGCAGAATCCGGTGATTCAAGCCTTACAGAAAGATGTTGACTTCT TAATGAAACAGAAAGTGGAGAATGAGACAAAGCTGTATGCCGGATTAGATGTGGTAAATGATCGGGTTCAAGGGCTCCGGAAAGAGATGACCGAGTTGCA GAAAATAGTAAGGAAACCGCCGCCATCATCTAATGAAACGATTGAAAAGGGGTCCTCCTCCGCCACCACCAGCGGTGGTGTCCATCCGAACACATCCGCC AAAAAGAAAGGACCGACGAAGTGGATTCAAAACTTGGGGAGAAGCAAGAAGGAAAAGGATCCGTAA
AA sequence Show only first row Show all	>Lus10006724 pacid=23163543 polypeptide=Lus10006724 locus=Lus10006724.g ID=Lus10006724.BGIv1.0 annot-version=v1.0 MSDIGSSEVTDAAAITGSGGGTTTTEIFEQRTTNTNPTHSRAGSVLDDLESQASGAGQVKRAYLALWTASSDDGADIKVPIPYFMKLYTDCAAILACMAV AGFWYAAGNTGAGKDLLKISRGALSASYCFLALLALCPLYLSFVYLRAKSDNWLVEDPPLWLKFFVTGPGTLGLLYVGNMQFTEKSDWATYVILCGYLYA VLIVRIIKPGYDFSIQEGFMGMVATKVYSLQDVPAEELSTTRKIICYVGVAVVVHFLHAVKLSFEMKEADLRNYKTEQQLKLLKGSHTVLIDRFNRAVGG WNKHVDEANDLETQVNALRTENGNLQTRISNLSDKNRILLDQNETLITENITLSVEKSTLIDNNGDLKAANNALSIEKDILVNQKGNLEIEIANLNIQIK ELNEKVKAKEKAYTAEINEQNPVIQALQKDVDFLMKQKVENETKLYAGLDVVNDRVQGLRKEMTELQKIVRKPPPSSNETIEKGSSSATTSGGVHPNTSA KKKGPTKWIQNLGRSKKEKDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006724 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	2.8	0.9857
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	3.2	0.9822
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	5.5	0.9717
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	6.3	0.9767
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	6.5	0.9764
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	6.9	0.9767
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	6.9	0.9769
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	8.1	0.9700
AT2G26520			unknown protein		Lus10021765 [exp]	8.2	0.9454
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	8.7	0.9677

Compare expression of checked genes

Lus10006724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.