Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038314 [exp] 67 / 5e-14 AT5G58760 759 / 0.0 damaged DNA binding 2 (.1) Lus10036179 [exp] 55 / 1e-09 AT5G58760 776 / 0.0 damaged DNA binding 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006725 pacid=23163569 polypeptide=Lus10006725 locus=Lus10006725.g ID=Lus10006725.BGIv1.0 annot-version=v1.0 ATGATGGTACCATATATGCTGCGGATGCATCCTCTGATGGAACCACCATCAGTTGCATTGACTTGGAGACTGGACTCTCATCCATCATCACTAATGAACC TCAATCCAAATGGTTTTGGAATTGTCCTATTCCATATAGTTTCTGGAATGTTTTCAAGTTTGCTCTTTGTTCATCATGAAATCCCCTGTCAGAAGTCTCT TTTCATATGGAGACCGAGTTGGAGTTCGGATGTGAATGGACAGAAGGAGGAGAGGACGATTTTCATTTGTGGAATCAACGAGGAAAGACGCATGAAGAAA TCTGGAAATGACTGTGATGATGATCATGATGATTCGAATGGTGGGTTCTAG
AA sequence Show only first row Show all	>Lus10006725 pacid=23163569 polypeptide=Lus10006725 locus=Lus10006725.g ID=Lus10006725.BGIv1.0 annot-version=v1.0 MMVPYMLRMHPLMEPPSVALTWRLDSHPSSLMNLNPNGFGIVLFHIVSGMFSSLLFVHHEIPCQKSLFIWRPSWSSDVNGQKEERTIFICGINEERRMKK SGNDCDDDHDDSNGGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006725 [exp]	0	1
AT5G16610			unknown protein		Lus10000454 [exp]	8.5	0.6885
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10036175 [exp]	17.3	0.7124
AT1G69240		RHS9, ATMES15	ROOT HAIR SPECIFIC 9, ARABIDOP...		Lus10037068 [exp]	26.5	0.7108
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	57.1	0.7054
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034047 [exp]	67.5	0.6869
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	68.2	0.6894
					Lus10036765 [exp]	70.0	0.6894
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	70.1	0.6913
AT2G16190			unknown protein		Lus10011284 [exp]	71.7	0.6894
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	73.4	0.6894

Compare expression of checked genes

Lus10006725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.