Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61330 56 / 2e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G78840 45 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G56400 44 / 4e-05 F-box family protein (.1.2) AT3G58880 42 / 0.0001 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011971 [exp] 139 / 4e-38 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10034733 [exp] 130 / 3e-35 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10018433 [exp] 117 / 2e-30 AT1G61330 109 / 2e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10010664 [exp] 115 / 1e-29 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10028334 [exp] 59 / 1e-11 ND / Lus10029682 [exp] 54 / 8e-10 ND / Lus10042721 [exp] 56 / 6e-09 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10006866 [exp] 45 / 2e-05 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10011254 [exp] 44 / 3e-05 AT1G61330 84 / 6e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 79 / 3e-17 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.004G034500 [exp] 78 / 8e-17 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.006G244700 [exp] 51 / 2e-07 AT5G41840 78 / 8e-15 F-box/RNI-like superfamily protein (.1) Potri.006G248600 [exp] 47 / 3e-06 AT5G41840 82 / 3e-16 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 45 / 1e-05 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006726 pacid=23163527 polypeptide=Lus10006726 locus=Lus10006726.g ID=Lus10006726.BGIv1.0 annot-version=v1.0 ATGAAGAGCCTCCACCTCCCGTACTTGCCAGACCACGTCGTAGAGCTGATCCTCGAACCCCTCAACATGCAACAGCTCGTCCCATTTTCCGCGGTAGCCA AGAGGTTCAGGCACCGCTATAGACGTAGCCCGTACCTGAACTTCGGCCGGTCCTTTTTCAAACGTATTAAGAAAAATCGGGTTACTAATTGGTTGAATCA TGAGGCTGAACAAGACCGGTATCGGTCGATAGTGGGCCAAATCATCGACAAGCACGACGGACCCAATATCCGATCCTTGAAGCTATCGTTCACCTCAGAA GACAGCACAGATTCTTGGGCTTTGGTCTCGGGCTGGATCGACAAAGCGGCCCGTAAAGGAGTACAAGAGCTCCAATTGGATTTCCGCAGATGGTTCAAAT TGACGGCTGAAGTTTTCAAAATTGAAACTCTGGAGATCCTACGGCTAACGTCGTGTAATCTCGTTTTGCCGCCTATTGGCGATTTTCGAATCACGGGGCT ACGATTCCTCAAGGTCTGCTCCCTTAAATATGCGAGTTTCGGTGCCATCCTCATCAAGGCAATGTTGGAACCATGTTTGGAATTGGAGATGCTAGAGCCC GTGAATTGA
AA sequence Show only first row Show all	>Lus10006726 pacid=23163527 polypeptide=Lus10006726 locus=Lus10006726.g ID=Lus10006726.BGIv1.0 annot-version=v1.0 MKSLHLPYLPDHVVELILEPLNMQQLVPFSAVAKRFRHRYRRSPYLNFGRSFFKRIKKNRVTNWLNHEAEQDRYRSIVGQIIDKHDGPNIRSLKLSFTSE DSTDSWALVSGWIDKAARKGVQELQLDFRRWFKLTAEVFKIETLEILRLTSCNLVLPPIGDFRITGLRFLKVCSLKYASFGAILIKAMLEPCLELEMLEP VN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	0	1
					Lus10000977 [exp]	3.7	1.0000
					Lus10000363 [exp]	3.9	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10002747 [exp]	4.6	1.0000
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	5.9	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	6.7	1.0000
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	7.0	1.0000
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	7.5	1.0000
					Lus10003285 [exp]	7.7	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	8.4	1.0000
					Lus10039545 [exp]	8.4	1.0000

Compare expression of checked genes

Lus10006726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.