Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63270 380 / 2e-135 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT1G67940 72 / 9e-15 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT3G62150 71 / 6e-14 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G27940 71 / 8e-14 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 70 / 1e-13 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G02530 68 / 5e-13 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT5G06530 67 / 8e-13 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT2G47000 67 / 1e-12 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G01830 67 / 2e-12 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G25750 66 / 2e-12 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022692 [exp] 433 / 1e-156 AT1G63270 403 / 8e-145 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10040034 [exp] 87 / 1e-22 AT1G63270 79 / 3e-20 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Lus10038050 [exp] 78 / 2e-16 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010012 [exp] 77 / 5e-16 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 76 / 9e-16 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 76 / 2e-15 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10035453 [exp] 74 / 2e-15 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10010074 [exp] 72 / 3e-14 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10029905 [exp] 71 / 5e-14 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110200 [exp] 377 / 2e-134 AT1G63270 387 / 2e-138 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) Potri.018G132000 [exp] 79 / 2e-17 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.002G187500 [exp] 73 / 1e-14 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 72 / 2e-14 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113500 [exp] 71 / 4e-14 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 71 / 9e-14 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.006G123900 [exp] 70 / 9e-14 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 69 / 2e-13 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113000 [exp] 68 / 4e-13 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G212701 [exp] 67 / 8e-13 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10006727 pacid=23163583 polypeptide=Lus10006727 locus=Lus10006727.g ID=Lus10006727.BGIv1.0 annot-version=v1.0 ATGTCTCTTCGAAGACCTGCTTTGCCAAGAATGCTTCTAGACAACGTCTCATGCATGAGAAACGCACAACAAATCTTGCGGAATGTTAACGTTTCAATAC ACGACGGTGGAGCACTTATTCTGACAGGAACAAACGGCTCAGGCAAAACAACACTCTTAAGGATGTTGGCCGGATTCTCTAAGCCATCAGCCGGCCAAGT ACTCTGGAACGGACATGACATAACAGACTCTGGAGTATTCCAGCAATACAAGCTTCAGCTAAACTGGCTCTCTCTCAAAGATGCAATGAAAGACAGGTTC ACCGTCCTCGAAAACGTACAGTGGTTCGAGGTCCTTGAGAGCAAGCAAGGGAAGTCTTTGCCTGCTCTTGAGCTGATGGGGCTTGGCAGGCTGGCTAACG AGAGGACGAGAATGCTGTCGATGGGCCAGCGGAAGAGGGTCCAACTCGCTAGATTGGTAGCAATGGATCGGCCTATTTGGTTGCTGGACGAGCCTTCTGT TGCGCTGGACGATGATGGGGTGAAGCTGCTTGAGTTCATAATCGCAGAGCACAGGAAGAAAGGCGGGATTGTGATCGTGGCGACCCATTTGCCAATCAAG ATTGAAGATGCAATGTTCCTTAGGCTGCCACCCAGGTTCCCTAGAAGGATGACTCATGTAGACATGCTTGATCGTTCAGACATCGAGGCATAA
AA sequence Show only first row Show all	>Lus10006727 pacid=23163583 polypeptide=Lus10006727 locus=Lus10006727.g ID=Lus10006727.BGIv1.0 annot-version=v1.0 MSLRRPALPRMLLDNVSCMRNAQQILRNVNVSIHDGGALILTGTNGSGKTTLLRMLAGFSKPSAGQVLWNGHDITDSGVFQQYKLQLNWLSLKDAMKDRF TVLENVQWFEVLESKQGKSLPALELMGLGRLANERTRMLSMGQRKRVQLARLVAMDRPIWLLDEPSVALDDDGVKLLEFIIAEHRKKGGIVIVATHLPIK IEDAMFLRLPPRFPRRMTHVDMLDRSDIEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	0	1
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	2.0	0.9332
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	6.5	0.9197
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	9.6	0.9117
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	9.9	0.9012
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	11.3	0.8511
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	11.7	0.8927
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	13.2	0.9027
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	15.4	0.9121
AT1G73350			unknown protein		Lus10031897 [exp]	15.9	0.8954
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	16.0	0.9006

Compare expression of checked genes

Lus10006727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.