Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18760 154 / 8e-49 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038301 [exp] 271 / 6e-95 AT3G18760 154 / 7e-49 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113200 [exp] 163 / 2e-52 AT3G18760 186 / 1e-61 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [flax] [poplar] Ribosomal_S6 Ribosomal protein S6
Representative CDS sequence Show only first row Show all	>Lus10006729 pacid=23163563 polypeptide=Lus10006729 locus=Lus10006729.g ID=Lus10006729.BGIv1.0 annot-version=v1.0 ATGCCTCTTTACGACTGTGTGCTTCTATTGAAGCCTCAAGTGGACAGAACATCAATTATGAGTTTGATGACTCGAATAGGAAACCACGTTGCTACTAGAA ATGGCGTCGTCACTGAAGTGAGATCATTTGGAACTATTCAACTTGGTTACGGCATCAAGAAACTTGATGGAAGATTTTTCCAGGGCCAACTGGTGCAGAT GACGATGATGGCGACACCCAACATGAACAAGGAGCTTCATTACCTGAACAAGGAGGATCGGTTGCTGAGGTGGCTTCTGACTAAACACCGAAACACGGTC TACTCTCATGACGATTACGATGAAGACACTGGGAAAAACGGACTGAAGAAATACTCGTACGGTGGAGCCATCTTAAACTTCCTCGAAAACGACGACGATG ATGTGGACGAAGACAGTGAGGACGAAGATGATGCTGGTGGCCGTTATGATGATAGACCTCGACTATGA
AA sequence Show only first row Show all	>Lus10006729 pacid=23163563 polypeptide=Lus10006729 locus=Lus10006729.g ID=Lus10006729.BGIv1.0 annot-version=v1.0 MPLYDCVLLLKPQVDRTSIMSLMTRIGNHVATRNGVVTEVRSFGTIQLGYGIKKLDGRFFQGQLVQMTMMATPNMNKELHYLNKEDRLLRWLLTKHRNTV YSHDDYDEDTGKNGLKKYSYGGAILNFLENDDDDVDEDSEDEDDAGGRYDDRPRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18760			Translation elongation factor...		Lus10006729 [exp]	0	1
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	2.8	0.9193
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	5.8	0.9070
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	6.0	0.8653
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	6.9	0.8275
AT5G40080			Mitochondrial ribosomal protei...		Lus10011032 [exp]	7.9	0.8875
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	8.6	0.8381
AT1G67785			unknown protein		Lus10042077 [exp]	9.2	0.8658
AT5G18790			Ribosomal protein L33 family p...		Lus10012786 [exp]	10.0	0.8791
AT2G01640			unknown protein		Lus10002816 [exp]	11.8	0.8625
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	13.5	0.8782

Compare expression of checked genes

Lus10006729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.