Plant FIBer expression Database

Lus10006730 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21620 63 / 2e-13 glycine-rich protein (.1.2)
AT1G61255 42 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011230
[exp]
75 / 1e-17 AT4G21620 81 / 2e-20 glycine-rich protein (.1.2)
Lus10018454
[exp]
74 / 1e-17 AT4G21620 80 / 3e-20 glycine-rich protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G045000
[exp]
63 / 3e-13 AT4G21620 69 / 1e-15 glycine-rich protein (.1.2)
Potri.004G036500
[exp]
58 / 4e-11 AT4G21620 65 / 7e-14 glycine-rich protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10006730 pacid=23163529 polypeptide=Lus10006730 locus=Lus10006730.g ID=Lus10006730.BGIv1.0 annot-version=v1.0
ATGAACACTACCAAATCCTCTTCCTTTCTTGTAGCCATTCTCCTTATCATCATCACCATCTCAACATTCCCACTCCTCTCCACCTCAGCCCGACCCGTAC
CCAAACCCACTCCCGACAATGACGGCCTAGGAATCGGAATTGGACCCTGGTTCTTCCCACCCGGGACAGGGATACCCGATTTGGGAGGCGGGTTCGGGTC
TGGGTTCGGAGGCCCGAAGGGGGGGTACTCGAAAAGCGGGGTCTATAGGCCTATCACGGTGTGCAAGGAGAAAGGGCCCTGTTTCAACAAGAAGCTGAGG
TGTCCGGCCAAGTGCTTCACCTCGTACAGCGGCTCCGGGAAAGGGTACGGCGGCGGAGGAGGCGGCGGCGGGTGCGCTATGGATTGTAAGAAGAAGTGTG
TTGCTTATTGTTGA
AA sequence
>Lus10006730 pacid=23163529 polypeptide=Lus10006730 locus=Lus10006730.g ID=Lus10006730.BGIv1.0 annot-version=v1.0
MNTTKSSSFLVAILLIIITISTFPLLSTSARPVPKPTPDNDGLGIGIGPWFFPPGTGIPDLGGGFGSGFGGPKGGYSKSGVYRPITVCKEKGPCFNKKLR
CPAKCFTSYSGSGKGYGGGGGGGGCAMDCKKKCVAYC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21620 glycine-rich protein (.1.2) Lus10006730
[exp]
0 1
AT4G03210 XTH9, EXGT-A6, ... xyloglucan endotransglucosylas... Lus10031586
[exp]
6.9 0.8544
AT1G62760 Plant invertase/pectin methyle... Lus10031132
[exp]
7.1 0.8450
AT1G02205 CER1 ECERIFERUM 1, Fatty acid hydro... Lus10011473
[exp]
11.1 0.8413
AT1G55370 NDF5 NDH-dependent cyclic electron ... Lus10020267
[exp]
14.3 0.8333
AT4G14723 EPFL4, CLL2 epidermal patterning factor li... Lus10021901
[exp]
14.5 0.8320
AT5G04820 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAM... Lus10021303
[exp]
25.1 0.8013
AT3G52750 FTSZ2-2 Tubulin/FtsZ family protein (.... Lus10021367
[exp]
31.0 0.8146
AT4G34160 CYCD3;1 CYCLIN D3;1 (.1) Lus10014089
[exp]
31.3 0.8089
AT3G06730 TRXz, TRXP ,TRX... thioredoxin putative plastidic... Lus10039499
[exp]
34.8 0.8268
AT1G02065 SBP SPL8 squamosa promoter binding prot... Lus10042882
[exp]
36.4 0.8002

Lus10006730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.