Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07180 666 / 0 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 664 / 0 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT4G28220 217 / 2e-63 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G21490 216 / 1e-62 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 214 / 5e-62 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 196 / 1e-55 NDB4 NAD(P)H dehydrogenase B4 (.1) AT5G08740 92 / 2e-19 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G27820 55 / 1e-07 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT3G09940 48 / 1e-05 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020091 [exp] 1028 / 0 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10040657 [exp] 663 / 0 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 663 / 0 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 656 / 0 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018248 [exp] 286 / 2e-93 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10039769 [exp] 261 / 5e-80 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018249 [exp] 237 / 3e-74 AT2G29990 274 / 3e-89 alternative NAD(P)H dehydrogenase 2 (.1) Lus10018541 [exp] 222 / 4e-65 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10006737 [exp] 214 / 3e-62 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044600 [exp] 835 / 0 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.004G036300 [exp] 816 / 0 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.009G047100 [exp] 688 / 0 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G042500 [exp] 209 / 2e-60 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.004G034100 [exp] 207 / 2e-59 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147300 [exp] 206 / 2e-59 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 201 / 2e-57 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.013G147400 [exp] 199 / 1e-56 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.007G098700 [exp] 71 / 1e-12 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G346200 [exp] 54 / 2e-07 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10006731 pacid=23163531 polypeptide=Lus10006731 locus=Lus10006731.g ID=Lus10006731.BGIv1.0 annot-version=v1.0 ATGGCGATGGCAAGGATTGCCAGGAATGGGCTGAGAAGGACAGGAGCATTAGCTTCTTCTGCCGATTACTTAAGATTCTCAGAGCAAAAAGCTCCCAAAC TATGCCCTGCGGTTATCAATCCTGTCCATGCCTCAACTTACAACTCCACGAGGACAGTTCATCATATGAGTTCCTGGAGCAGAGGAATCAGGGGAACCCC AAATTACCAGTCTCCAAATGCTGAGCGGATTGTCGAGGAGGAGGTTGAGGAGCACGAGCTCCCCGAGACTAGATACCCTGGTCTAGAGGCAACCAAGCCT GGCGAAAAGTCAAGGGTGGTGGTGCTTGGAAGCGGGTGGGCTGCTTGCAGATTCATGAAGGGACTGGACACTAAAATATATGATGTAGTCTGCATTTCGC CGAGGAATCATATGGTTTTCACCCCTTTGCTCGCTTCGACATGTGTTGGTACGCTTGAGTTTCGGTCTGTTGCTGAGCCTGTTAACCGCATTCAGCCTGC TTTGGCTTCTGCTCCCGACTCTTACTTTTATCTGGCCTCTTGCCTTGGCGTTGATACCGACAAACATGAGGTGTACTGCCAAACGGTGACGAATGACGGG TTAAATAAAGAACCGCGCAAATTCAAAGTTGCATATGATAAGCTAGTGATTGCTGCTGGAGCAGAGCCCTTAACTTTCGGGATCAAGGGTGTGGAAGAAC ATGCATTTTTCCTGAGAGAAGTTAATCATGCTCAGGAAATTAGGAAGAAGCTCCTCCTGAACCTTATGCTTTCTGACAGCCCTGGGGTGCCCGAAGAAGA GAAGAAGCGGCTTTTGCATTGCGTCGTGATTGGTGGAGGCCCGACTGGTGTGGAATTCAGTGGCGAACTCAGTGACTTCATTGGTAAAGATGTCCGTGAA CGGTTTTCTCATGTCAAGGATGATATCAAAGTCACTCTCATTGAGGCAAATGAAATCCTGTCGTCGTTCGATGTTGGGCTAAGACAGTATGCAACAAACC ATTTGAGGAAGTCTGGAGTGAAGCTGATGCGTGGTGTGGTAAAAGAGGTGCATCCACACAAGATCGTTCTTAATGATGGCACCAATGTTCCTTATGGCCT CCTCGTCTGGTCAACCGGCGTTGGTCCTTCCCAATTCGTCAAATCTTTGGCTCTTCCCAAATCACCCGGTGGAAGGATTGGAGTGGACGAGCATCTACGA GTTCCATCAGCACCAGACGTGTTCGCAATGGGAGACTGCGCAGGTTTCCTCGAGTCAACGGGGAAACCAGTCCTACCAGCTCTAGCTCAAGTTGCAGAGA GGCAAGGCAAATACCTGGTGGAGCTTTTCAACAACCGGATTGGAAAGCAGAACGGCGGCAAGGCGGCCGCTGCCGGAGCAGAGAACGACGCCGTATTGGG AGATCCGTTCGTGTACAAGCACATGGGAAGCATGGCCACCGTGGGAAGATACAAGGCTCTTGTGGATCTCCGGCAGTCTAAAGATGCAAAGGGTCTGTCG ATGGCCGGGTTCTTGAGCTGGGTGATTTGGCGGTCTGCGTATTTGACACGTGTTGTGAGCTGGAGGAACAGGTTCTACGTGGCGGTCAACTGGGCTACCA CCTTCGTTTTCGGCAGAGATAGTTCCAGGATATAG
AA sequence Show only first row Show all	>Lus10006731 pacid=23163531 polypeptide=Lus10006731 locus=Lus10006731.g ID=Lus10006731.BGIv1.0 annot-version=v1.0 MAMARIARNGLRRTGALASSADYLRFSEQKAPKLCPAVINPVHASTYNSTRTVHHMSSWSRGIRGTPNYQSPNAERIVEEEVEEHELPETRYPGLEATKP GEKSRVVVLGSGWAACRFMKGLDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVNRIQPALASAPDSYFYLASCLGVDTDKHEVYCQTVTNDG LNKEPRKFKVAYDKLVIAAGAEPLTFGIKGVEEHAFFLREVNHAQEIRKKLLLNLMLSDSPGVPEEEKKRLLHCVVIGGGPTGVEFSGELSDFIGKDVRE RFSHVKDDIKVTLIEANEILSSFDVGLRQYATNHLRKSGVKLMRGVVKEVHPHKIVLNDGTNVPYGLLVWSTGVGPSQFVKSLALPKSPGGRIGVDEHLR VPSAPDVFAMGDCAGFLESTGKPVLPALAQVAERQGKYLVELFNNRIGKQNGGKAAAAGAENDAVLGDPFVYKHMGSMATVGRYKALVDLRQSKDAKGLS MAGFLSWVIWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDSSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10006731 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Lus10018919 [exp]	3.2	0.9010
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	4.0	0.8718
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10020091 [exp]	4.9	0.8882
					Lus10028488 [exp]	5.5	0.8986
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	6.4	0.9110
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	10.7	0.8741
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	11.4	0.8751
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	26.8	0.8453
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	31.2	0.7833
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	31.2	0.8739

Compare expression of checked genes

Lus10006731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.