Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 939 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 829 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 819 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G36360 805 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 746 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 734 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G63810 715 / 0 BGAL10 beta-galactosidase 10 (.1) AT3G52840 710 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 705 / 0 BGAL4 beta-galactosidase 4 (.1) AT5G20710 699 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011237 [exp] 1080 / 0 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10037644 [exp] 840 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 831 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 828 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 790 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10016655 [exp] 788 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10025980 [exp] 779 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10000271 [exp] 769 / 0 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10003343 [exp] 766 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044300 [exp] 1272 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.009G012400 [exp] 924 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 838 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 835 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 824 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 808 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.017G057900 [exp] 804 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.005G232600 [exp] 804 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 798 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.001G025800 [exp] 746 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10006733 pacid=23163536 polypeptide=Lus10006733 locus=Lus10006733.g ID=Lus10006733.BGIv1.0 annot-version=v1.0 ATGGGAAGGAAGGTCGAGTTACTAGCATTGTGTTTGCTGCTGGTTGTTTTTCAGTTTGAGAAAGCTAAGTGTTTCTCAGTCTCTTATGATAACAGGGCTT TGGTTATCGATGGAAAGCGGAGGGTTCTGCAATCTGGCTCCGTTCATTATCCTCGAACCACTCCCGAGATGTGGCCGGAGATCATTAGGAAGTCAAAGGA AGGGGGATTGGACGTGATCGAGACTTACGTGTTTTGGAACTATCACGAGCCTACCAGAGGACAGTACTACTTTGAGGGCAGGTACGACCTTGTGAAGTTC TTGAGAACTGTTCAGGAAGCTGGCCTAATGGCGCACCTGCGGATTGGTCCCTATGCTTGTGCTGAATGGAATTATGGAGGATTTCCAATGTGGTTACATT TTCTTCCTGGGATTCAGTTTCGGACTACGAATAGCGTATTCCAGAGTGAAATTCAGCGCTTCCTTGAGAAGATTGTGGATATGATGAATGGAGAGAATCT ATTTGCATCACAAGGAGGGCCGATCATCCTCGCCCAGGTTGAGAATGAATACGGTAATGTTGAGTGGGCATATGGACTTCCCGGACGAGATTATGTAAGA TGGGCTGCAGAAACTGCTCTTAGTCTGAATGTATCTGTACCTTGGGTGATGTGCCAACAGTCTGATGCTCCTGATCCAATTATAAACACATGTAATGGAT TCTACTGTGATCAGTTCACCCCAAATTCTCCTTCGAAACCAAAATTCTGGACTGAGAACTACCCTGGATGGTACGTTACATTTGGATCACCAATTCCACG TCGTCCTGTCGAGGATGTTGCTTTTGCTGTTGCTCGTTTCTTTGAAAATGGTGGAACTTTACAAAATTATTACATGGCAAGTGCATCGTCTCTTTGGAAC GGTGGATCATGCTCATACTTTGGAGGAACTAACTTCGGACGAACAGCTGGAGGTCCTATGATTGCAACCAGCTATGACTACGATGCCCCAATTGATGAAT ATGGTTTTACGAGACAGCCCAAATGGGGACACCTACGTGACTTGCACCAGGCAATCAAACAGTGTGAAGACTACCTAGTCACATCAGATCCCACTCACCA GAGTTTGGGATACAACTTAGAGGCACATGTCTACTGCAAATCTTCAGCTGATTGTGCAGCATTTCTCGCTAATTATGGAAGCAGTTCTGATGCAAATGTG ACATTCAATGGGAATACTTACTCTCTCCCTGCTTGGTCTGTGAGCATACTTCCAGACTCCAAAAATGTTGTTTTTAACACAGCAACGATTACTACTCAAA GAAGTGTCCATGACTCTCCACTTGACAGCAACACGACAAGGTTTGAGATGTCACTTGAGACGTCGGTTTGGAGTTGGTATAAGGAACAAATCGGCATTTC TGGGAACAACTCGTTTACCGCTCATGGCTTGTTGGAGCATATTAATACCACGGAAGACACTAGTGATTTTTTGTGGTACTCGACCAGTTTTATGAATTCT GGCCAAGCTACTGATGGCCTACTGAACATTGAGAGTTTGGGACAAGCCGCACTGGTCTTTCTGAACAAGAATCGTATTGAGTTTGGATTTGGCTCTCACA ACATACCAGGTTTCTCACTATCCCAGAAAGTCGCTCTCGTTGGAGGAAATAACACACTGGACATTTTGAGTATGATGGTTGGTGTCCAGAACTACGGGCC ATGGTTTGATGTTCAAAAGGCTGGACTTCTGGCTGTCATCCTCGCAGACTTTCATAATGGCATCAACAATCTTGGTTCTGGAGACTGGAATTACCAGGTA GGACTTGAAGGAGAACACCTTGGACTGGAAGATGTCAATGCATCATATAGCTCACTCTGGAGTCAAGGAAATGATATGCCTGTTAGTGACAGTTTGATAT GGTACAAGACAACATTCTCTTCTCCTCAAGGAGAGGGACCTTTAGTCTTGGATCTCGCGAGCATGGGAAAAGGCGAAGCATGGGTTAACGGGGAGAGCAT AGGACGATACTGGTCGACGTATCTCTCACCATCAACAGGTTGCAATGAGGCGTGTGACTACAGAGGACCTAAGGATGAAACTACTTGCCTGACGAAATGC GGCCAACCTTCTCAAACATTGTATCATGTTCCGCGAGCTTGGGTTCATCCTGGCGACAACCTGCTGGTCCTACGCGAGGAGCTCGGAGGCGACCCGAGAC AGATCACAGTTTTATCACACACAGGGCAGGAGATATGTTCTGTCATATCAGAGAAGGATCCACCACCACCGGAATCTTGGAGACCGAACATGGGATTTGC ATCCCAAAGCCCCGAAGTTAGGCTGAAATGCGAACAAGGATGGCACATTACATCCATCAATTTCGCCGCCTTCGGGGATCCTCAAGGAGAATGTGGCAGT TTCAGGCCGGGGGGTTCTTGTCATGCTGATATGCTATCCGTTGTCCAGAATGCTTGCATTGGCCAAGAAGGGTGCTCGGTTCCTCTTTCGATGGCTGCAG CCAGCCTTACAGGTCCTTGCCCGGGAGTCTCGAAACGTTTCGTAGTGGAAGCTTTATGCAGCTAG
AA sequence Show only first row Show all	>Lus10006733 pacid=23163536 polypeptide=Lus10006733 locus=Lus10006733.g ID=Lus10006733.BGIv1.0 annot-version=v1.0 MGRKVELLALCLLLVVFQFEKAKCFSVSYDNRALVIDGKRRVLQSGSVHYPRTTPEMWPEIIRKSKEGGLDVIETYVFWNYHEPTRGQYYFEGRYDLVKF LRTVQEAGLMAHLRIGPYACAEWNYGGFPMWLHFLPGIQFRTTNSVFQSEIQRFLEKIVDMMNGENLFASQGGPIILAQVENEYGNVEWAYGLPGRDYVR WAAETALSLNVSVPWVMCQQSDAPDPIINTCNGFYCDQFTPNSPSKPKFWTENYPGWYVTFGSPIPRRPVEDVAFAVARFFENGGTLQNYYMASASSLWN GGSCSYFGGTNFGRTAGGPMIATSYDYDAPIDEYGFTRQPKWGHLRDLHQAIKQCEDYLVTSDPTHQSLGYNLEAHVYCKSSADCAAFLANYGSSSDANV TFNGNTYSLPAWSVSILPDSKNVVFNTATITTQRSVHDSPLDSNTTRFEMSLETSVWSWYKEQIGISGNNSFTAHGLLEHINTTEDTSDFLWYSTSFMNS GQATDGLLNIESLGQAALVFLNKNRIEFGFGSHNIPGFSLSQKVALVGGNNTLDILSMMVGVQNYGPWFDVQKAGLLAVILADFHNGINNLGSGDWNYQV GLEGEHLGLEDVNASYSSLWSQGNDMPVSDSLIWYKTTFSSPQGEGPLVLDLASMGKGEAWVNGESIGRYWSTYLSPSTGCNEACDYRGPKDETTCLTKC GQPSQTLYHVPRAWVHPGDNLLVLREELGGDPRQITVLSHTGQEICSVISEKDPPPPESWRPNMGFASQSPEVRLKCEQGWHITSINFAAFGDPQGECGS FRPGGSCHADMLSVVQNACIGQEGCSVPLSMAAASLTGPCPGVSKRFVVEALCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	0	1
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	1.0	0.9736
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	1.7	0.9548
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	2.4	0.9620
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	5.7	0.9542
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	8.5	0.9494
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	8.5	0.9427
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	8.8	0.9467
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	9.8	0.9332
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	10.5	0.9129
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	10.7	0.9498

Compare expression of checked genes

Lus10006733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.