Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61290 466 / 4e-167 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT1G11250 441 / 3e-157 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT4G03330 401 / 1e-141 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G11820 343 / 8e-118 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 304 / 1e-102 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G08560 254 / 1e-83 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT3G03800 248 / 2e-81 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 236 / 2e-76 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT2G18260 196 / 6e-61 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G46860 43 / 0.0001 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020089 [exp] 525 / 0 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10018441 [exp] 499 / 3e-180 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 495 / 2e-178 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10016173 [exp] 363 / 5e-126 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 355 / 7e-123 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 350 / 3e-121 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 348 / 2e-120 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021988 [exp] 273 / 8e-91 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1) Lus10042527 [exp] 273 / 9e-91 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035400 [exp] 498 / 7e-180 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 495 / 9e-179 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.006G202200 [exp] 357 / 7e-124 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 343 / 2e-118 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.013G053200 [exp] 291 / 3e-98 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 283 / 9e-95 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 250 / 6e-82 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 224 / 5e-71 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 210 / 2e-66 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 201 / 2e-63 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10006735 pacid=23163581 polypeptide=Lus10006735 locus=Lus10006735.g ID=Lus10006735.BGIv1.0 annot-version=v1.0 ATGAACGACCTTTTCTCGAGTTCGTTTAAGAAATACACGGACCTGAGGCAGCAGACTCAGATGGATGATCTTGAGGCAGGGACGCAGAATACGAACCTCG ATAAGTTCTTCCAAGATGTGGAAAATGTCAAGGACGACATGGCGACCGTGGCCAAGCTGCACAAATCTTTGCAAGAATCCAATGAGGAAATCAAGACCGT GCACAATGTGAAGACCGTGAAGGATCTGAGGTCGAGGATGGATTCGGATGTGGCACAGGTGCTGAAGCGGGTCAGGGTCATTAAGGGGAAGCTAGAAGCG TTGGAGAGATCGAATGCAGCTGCGCGTAGCATTCCTGGCTGCGGTCCTGGTTCGTCAGCTGATCGAACCAGGACGTCCGTGGTTGGGGGTTTGGGGAAGA AGCTCAAGGACCTGATGGACGATTTTCAAAACCTGAGGGCTAAGATGTCGGCAGAGTATAAAGAGACCGTCGAGAGAAGGTATTTCACCATCACGGGGGA GAAGGCGAGCGAGGATTTGATCGAGAACCTAATTGAAAGCGGGGAGAGCGAGAGCTTCCTTCAGAAAGCGATCCAGGAGCAAGGGAGGGGTCAGATTCTT GACACGATATCGGAGATTCAGGAAAGGCACGATGCAGTGAAGGAGATTGAGAAGAATCTCATCGAGTTACATCAGGTGTTCTTGGACATGGCAGCTCTTG TGGAGGCTCAGGGGCATCAGCTCAATGATATCGAGGGCCAGGTGGCGCATGCCAGCTCGTTTGTTCGGCGTGGCACTGAGCAGCTTCAAGAGGCCAGGGA GCATCAGAAGAGCTCAAGGAAGTGGACGTGCATTGCCATTATTCTTGGCATTGTGCTCATTATTCTCCTTTTACTTCCTCTTGTGCCATCCATCATAGCA CTTATTCAAAGCAGCAGATGA
AA sequence Show only first row Show all	>Lus10006735 pacid=23163581 polypeptide=Lus10006735 locus=Lus10006735.g ID=Lus10006735.BGIv1.0 annot-version=v1.0 MNDLFSSSFKKYTDLRQQTQMDDLEAGTQNTNLDKFFQDVENVKDDMATVAKLHKSLQESNEEIKTVHNVKTVKDLRSRMDSDVAQVLKRVRVIKGKLEA LERSNAAARSIPGCGPGSSADRTRTSVVGGLGKKLKDLMDDFQNLRAKMSAEYKETVERRYFTITGEKASEDLIENLIESGESESFLQKAIQEQGRGQIL DTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGHQLNDIEGQVAHASSFVRRGTEQLQEAREHQKSSRKWTCIAIILGIVLIILLLLPLVPSIIA LIQSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10006735 [exp]	0	1
					Lus10000325 [exp]	2.4	1.0000
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10004735 [exp]	4.2	1.0000
					Lus10002099 [exp]	5.1	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	7.2	1.0000
					Lus10025316 [exp]	7.3	1.0000
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	7.9	1.0000
					Lus10032121 [exp]	8.1	1.0000
					Lus10011594 [exp]	8.1	1.0000
AT5G39200			unknown protein		Lus10030710 [exp]	8.5	1.0000
AT4G20800			FAD-binding Berberine family p...		Lus10006507 [exp]	8.8	1.0000

Compare expression of checked genes

Lus10006735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.