Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02065 686 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G58570 263 / 3e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 261 / 1e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 256 / 2e-79 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 257 / 2e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58510 256 / 8e-78 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G01540 251 / 6e-76 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 248 / 2e-74 DEAD box RNA helicase family protein (.1.2) AT3G06480 237 / 5e-68 DEAD box RNA helicase family protein (.1) AT2G33730 229 / 8e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020088 [exp] 1010 / 0 AT3G02065 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10015977 [exp] 260 / 1e-80 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 261 / 1e-79 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 260 / 1e-79 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 259 / 2e-79 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 252 / 2e-77 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032135 [exp] 255 / 3e-77 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10016207 [exp] 254 / 5e-77 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 251 / 6e-77 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140100 [exp] 759 / 0 AT3G02065 681 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G217800 [exp] 266 / 1e-81 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 260 / 2e-79 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 252 / 1e-77 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G061900 [exp] 253 / 1e-76 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G347100 [exp] 254 / 9e-76 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.015G083000 [exp] 249 / 2e-75 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G196000 [exp] 249 / 2e-75 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G071400 [exp] 253 / 3e-75 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 239 / 4e-72 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10006736 pacid=23163547 polypeptide=Lus10006736 locus=Lus10006736.g ID=Lus10006736.BGIv1.0 annot-version=v1.0 ATGACTGGAGTTGATGCAGTTGAACGCTCAGTTGAAGATGAAGCTGATGAGGTAAAGAAGAGTTCCAGGCAGCAGAGGTTAGCTCTGCAAGGGGAACCGA AATGTGTGATATGTGGGCGCTATGGCGAGTACATCTGTGATGAAACAGATGATGACGTATGTAGTTTGGAGTGCAAACAAGTTGTACTAGACAGAACCAT CGCCAAGCACCGGGGATCAACAAGTAATCGAATCGTGGTTTCTGCCAAGGATGAGTGCTTCTACGTTCGAGATTCGATGTCCTTAACTGCTGATCAGACT GTCACGTTGAGAAAGAAGCTTGACATCCATGTTAAGGGTGATGATTTGGTTCCACCTCCCATGCTGTCATTCTCTAGCTGCAATCTTCCCTCAAAGCTAC TTCAGAACATAGAATCTGCAGGTTTCGACGTGCCTACACCTGTGCAGATGCAGGCAATTCCGATCTCGTTGAGTGGCAAGAGTCTGTTAGCTTCTGCTGA AACCGGTTCTGGTAAAACCGCTTCCTTTTTAGTTCCTGTCGTCACACGTTGTTCGAGACATCAAAATCTGAACCGTAAGAAGCCATTAGGGATTGTTCTA ACACCGACTAGGGAGCTCTGCATACAAGTTGAGGATCAAGCGAAGTTGCTTGGGAAAGGTTTACTATTCAAGACTGCTCTTGTGGTCGGTGGTGATGCAA TGGCTGGACAAGTTCACCGCCTTCAGCAAGGAGTGGAGCTTATTGTGGCGACCCCAGGAAGGCTTATTGATCTGTTAACAAAGCATGATATTGAACTGGA TGAGGTAAAGATGTTTGTGGTTGATGAAGTTGACTGCATGCTCCAGAGTGGCTTTCGCGATCAGGTTATGCAGATTTTTGTGAGTCTCGCTCAACCCCAG GTGTTGATGTATTCAGCGACGGTCTCAGAGGAAGTGGAGAAGTTGGCAAGCTCCATGGCCAAAGAAATCGTCTCCATCTCCATAGGCCTACGTAACAGGC CAAGTATGGCAGTGAAACAGCTAGCTATTTGGGTTGAAACTAAGCAAAAGAAGCAAAAGCTCTTCGACATACTGTTGAGTAAGCAGCATTTCGTCCCACC AGTTGTTGTCTATGTGGGATCAAGACTAGGGGCAGATCTCCTTTCTAACGCAATCACTGTGAGGACTGGTTTGAAGGCTCTATCGATTCATGGCGAGAAG CCGATGAAGGAGAGGAGAGAAATTATGAGAGCATTCTTAATGGGGGAAGCTCCAGTGATTGTTTCGACTGGAGTTTTGGGTCGTGGAATGGATCTGTTGG GTGTGAGACAGGTTATTGTGTTTGACATGCCGAATTCCATTAAGGAGTATGTTCATATGATTGGCAGGGCATCTCGGATGGGAGAAGAAGGCAAAGCCAT AGCCTTCATCAACGAAGAGAATAAGGTTATATTCTCAGAGTTGGTGGAGGTATTGAAGTCGTCCGGAGCTGCAATACCTCGAGAACTTTCTTCACGATAC ACTGCCAAATCCTTGCCTGTAGGGAAGAGTTGGAAGAAGCGGAAGTTCAGTTCATAA
AA sequence Show only first row Show all	>Lus10006736 pacid=23163547 polypeptide=Lus10006736 locus=Lus10006736.g ID=Lus10006736.BGIv1.0 annot-version=v1.0 MTGVDAVERSVEDEADEVKKSSRQQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQVVLDRTIAKHRGSTSNRIVVSAKDECFYVRDSMSLTADQT VTLRKKLDIHVKGDDLVPPPMLSFSSCNLPSKLLQNIESAGFDVPTPVQMQAIPISLSGKSLLASAETGSGKTASFLVPVVTRCSRHQNLNRKKPLGIVL TPTRELCIQVEDQAKLLGKGLLFKTALVVGGDAMAGQVHRLQQGVELIVATPGRLIDLLTKHDIELDEVKMFVVDEVDCMLQSGFRDQVMQIFVSLAQPQ VLMYSATVSEEVEKLASSMAKEIVSISIGLRNRPSMAVKQLAIWVETKQKKQKLFDILLSKQHFVPPVVVYVGSRLGADLLSNAITVRTGLKALSIHGEK PMKERREIMRAFLMGEAPVIVSTGVLGRGMDLLGVRQVIVFDMPNSIKEYVHMIGRASRMGEEGKAIAFINEENKVIFSELVEVLKSSGAAIPRELSSRY TAKSLPVGKSWKKRKFSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02065			P-loop containing nucleoside t...		Lus10006736 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	12.0	0.7707
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	13.7	0.7645
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	19.2	0.7347
AT3G46220			unknown protein		Lus10040874 [exp]	20.7	0.7398
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	23.4	0.7500
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	26.0	0.7456
AT1G33970			P-loop containing nucleoside t...		Lus10009483 [exp]	32.2	0.6803
AT3G07565			Protein of unknown function (D...		Lus10027044 [exp]	33.2	0.7200
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	33.2	0.7452
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	38.1	0.7381

Compare expression of checked genes

Lus10006736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.