Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05020 865 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 850 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 770 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 727 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G07180 211 / 3e-61 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 210 / 6e-61 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT5G22140 60 / 2e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT3G44190 59 / 6e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G08740 55 / 9e-08 NDC1 NAD(P)H dehydrogenase C1 (.1) AT5G03630 54 / 2e-07 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020087 [exp] 1116 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 1037 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 930 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002599 [exp] 736 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 736 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10002601 [exp] 707 / 0 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10039769 [exp] 703 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018540 [exp] 697 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039768 [exp] 691 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034100 [exp] 928 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 914 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147300 [exp] 790 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400 [exp] 783 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 759 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 251 / 6e-76 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 249 / 2e-75 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 214 / 1e-62 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 68 / 4e-12 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G098700 [exp] 56 / 5e-08 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10006737 pacid=23163558 polypeptide=Lus10006737 locus=Lus10006737.g ID=Lus10006737.BGIv1.0 annot-version=v1.0 ATGAAAGCGATCAAGTGGCTCGAGAGAGCTTCTAGAACGTATCATGACAGTTCCGCACTCTCTAAACTGCTAGTCGTCTTCACTGTCAGTGGTGGAGGAC TTGTCGCTTATGCTGATGCAAACTCGTTGAGTCATGTTGCTCCACCCGAGATCAAGAAGAAGAGGGTGGTTGTTCTGGGAACCGGATGGGCAGGGACGAG TTTCTTGAAGCAGTTGAATGATCCTGCCTACGATGTTCAAGTGATATCGCCTCGGAATTATTTTGCATTCACTCCTTTGCTACCGAGTGTTACTGTTGGT ACAGTGGAACCTCGCAGCATCGTGGAACCAATCCGTAACATTGTCAAGAAGAAAAACGTTGATGTACGTTACTGGGAAGCTGAATGTTTCAAGATCGATT CTCAGAGTAAGAAGGTCCACTGTCGTTCTAATCAGAACGTCGATGGAAATGGGAAGGAAGAATTTGTTGTCGATTATGACTACCTTGTTATTGCAATGGG AGGGCGTCCCAATACTTTCAATACTCCTGGCGTTGTGGAACACTGCAACTTTCTTAAGGAAGTTGAAGATGCTCAGCGGATCCGTAGGTCAGTTGTTGAC TGTTTTGAGAAGGCAAGCCTGCCAAGTCTGAGCGAGGAAGAGAGGGATAAAATCCTCCATTTTGTGGTGGTAGGTGGTGGCCCAACGGGTGTGGAGTTCG CTGCAGAACTCCATGATTTTGTTACTGAAGATTTAGTCAAATTGTACCCAGCAGCGAGGAAGTATGTCAAGATAACACTACTCGAGGCGGCAGATCATAT CCTTACGATGTTTGACAAACGAATTACAGAATTTGCTGAAGACAAGTTCAAAAGAGATGGCATAGATGTCAAATTAGGATCGATGGTTACGAAAGTATCT GATAAAGAAATTTCCACTAAAGCTAGAGTTGATGGCCAAGTTACCAACATGCCGTACGGAATGATCGTCTGGTCAACTGGAATTGGTGCTCATCCGGTCA TAAGGGACTTTATGAAGCAAGTTGGTCAAGAAAATAGACGTGCTTTGGCAACTGATGAATGGCTACGCGTTGAAGGAACTGATAGCATATATGCCCTGGG TGACTGTGCGACAATTAACCAGCGGAAAGTCATGGAAGATATAGATGCAATTTTTAAGAAGGCAGACAAAGACAACTCTGGAACTCTCACTGTAAAGGAG CTTCAAGAAGTAATTGACGATATCTGTGAAAGGTACCCCCAAGTGGGTCTTTATCTGAAGACAAAGAAACTGCGGAATATTGCTGATCTTCTCAGTGAAG CCAAAGGCGACGATTCAAAGGGCTCTGTTGAACTTAGCATTGAAGAGCTAAAAACTGCCCTCAAGGAAGTTGATTCTCAAGTCAAGAACTTCCCAGCAAC AGCTCAGGTTGCAGCCCAGCAGGGTAGCTACCTTGCCCATTGCTTCAACCGCATGGAAGAGGCTGAGAAGAATCCAGAAGGACCACTAAGGTTCAGAGGA GAGGGCCGCCACAGGTTTCGCCCCTTCAGTTACAAGCATTTCGGCCAGTTCGCTCCGCTGGGAGGAGAACAAACAGCAGCCCAACTTCCCGGTGACTGGG TTTCAATTGGCCACAGTTCCCAGTGGCTCTGGTACTCCGTCTATGCAAGTAAGCTGGTGAGCTGGCGTACGAGAGCATTGGTGATAACTGACTGGATGAA GCGTTTCATCTTCGGGAGGGATTCCAGTTCCATTTGA
AA sequence Show only first row Show all	>Lus10006737 pacid=23163558 polypeptide=Lus10006737 locus=Lus10006737.g ID=Lus10006737.BGIv1.0 annot-version=v1.0 MKAIKWLERASRTYHDSSALSKLLVVFTVSGGGLVAYADANSLSHVAPPEIKKKRVVVLGTGWAGTSFLKQLNDPAYDVQVISPRNYFAFTPLLPSVTVG TVEPRSIVEPIRNIVKKKNVDVRYWEAECFKIDSQSKKVHCRSNQNVDGNGKEEFVVDYDYLVIAMGGRPNTFNTPGVVEHCNFLKEVEDAQRIRRSVVD CFEKASLPSLSEEERDKILHFVVVGGGPTGVEFAAELHDFVTEDLVKLYPAARKYVKITLLEAADHILTMFDKRITEFAEDKFKRDGIDVKLGSMVTKVS DKEISTKARVDGQVTNMPYGMIVWSTGIGAHPVIRDFMKQVGQENRRALATDEWLRVEGTDSIYALGDCATINQRKVMEDIDAIFKKADKDNSGTLTVKE LQEVIDDICERYPQVGLYLKTKKLRNIADLLSEAKGDDSKGSVELSIEELKTALKEVDSQVKNFPATAQVAAQQGSYLAHCFNRMEEAEKNPEGPLRFRG EGRHRFRPFSYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVITDWMKRFIFGRDSSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10006737 [exp]	0	1
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	47.0	0.7887
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10010537 [exp]	76.2	0.7711
AT1G52320			unknown protein		Lus10025777 [exp]	108.2	0.7680
AT1G73820			Ssu72-like family protein (.1)		Lus10005003 [exp]	117.5	0.7431
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	118.9	0.7593
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	121.0	0.7614
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	133.5	0.7500
AT5G61910			DCD (Development and Cell Deat...		Lus10032533 [exp]	151.0	0.7453
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	170.0	0.7480
AT4G27020			unknown protein		Lus10043107 [exp]	258.0	0.7257

Compare expression of checked genes

Lus10006737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.