Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12820 647 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 641 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT3G26810 631 / 0 AFB2 auxin signaling F-box 2 (.1) AT4G03190 594 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT4G24390 556 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT5G49980 553 / 0 AFB5 auxin F-box protein 5 (.1) AT2G39940 308 / 3e-97 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 102 / 1e-22 F-box/RNI-like superfamily protein (.1) AT5G67250 77 / 1e-14 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT1G47056 72 / 4e-13 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020086 [exp] 1164 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 1027 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 895 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 884 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 680 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 638 / 0 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 570 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 487 / 6e-169 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011261 [exp] 362 / 2e-123 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 974 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 965 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 649 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 646 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 629 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 620 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 593 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 587 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 303 / 4e-95 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 299 / 1e-93 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006738 pacid=23163578 polypeptide=Lus10006738 locus=Lus10006738.g ID=Lus10006738.BGIv1.0 annot-version=v1.0 ATGGATCGGAGCCCCAAACGGACCACCACCACCAACCTCTTCCCCGACGAGGTCCTCGAGCGAGTCCTCTCCCTGGTCAAATCTCACAAGGACCGTAGCT CCGTCTCCTTGGTCTGCAAGGACTGGTACAGCGCCGAGAGCTGGTCCAGGACTCACGTAACCCACGTCTTCATCGGGAACTGCTATTCAGTCTCACCTGA GATCGTCGTCCGCCGCTTCCCTAGTATCCGGAGTGTCACGCTCAAGGGGAAACCCAGGTTCTCCGATTTCAACCTCGTCCCTGACAACTGGGGTGCCGAT GTGCAGTCCTGGCTGGAGGTGTTCGCGTCTGAATATCCGTTCCTTGAAGAACTACGGTTGAAGAGAATGAGGGTTACCGACAAGAGCTTGCAGTTCTTGG CTGTCAAGTTCCCTAATTTCAAAGCTCTCTCGCTATTGAGCTGCGATGGGTTCAGCACTTCCGGACTTGCCGCCGTTGCCGCTCATTGCAGGAATCTGAC TGAGCTGGACATACAGGAGAACGGTATAGAAGACAGCAGTGGGGATTGGTTAAGCTGTTTTCCTGACAACTTCAACACATTGGAAGTGCTGAATTTCTCC AACTTGAATACTGATGTGAACCCTGAAGTTCTGGAGAGGCTTGTAAGCAGATGCAGATCGTTGAAGGTTCTTAAGGTTAACAGGAGCATTTCACTGGATT GTCTCCAGAGGTTGCTTTGTTATGCACCTCAGTTGATGGAACTCGGTGCTGGCTCTTTCTCACAAGAACTCACGCCTCGCCAGTATTCAGACCTGGAACA TGCTTTCAGTCTATGCAAGAATCTCAGTGTACTTTCTGGTTTGTGGGAAGCAACAACATTGAATCTCTCAGCCATCTACCCGTCCTGCTCACGGCTCACT TTCCTAAACTTGAGTTATGCTGCTTTGCAAAGTCAAGAACTTGGTAGTCTGCTTCCTCATTGCCCTTCTCTTCGCCGCCTCTGGGTTCTGGACTCTGTTG GAGACAAAGGACTAGAAGCTGTAGGAGAGAAATGTCCTTTGTTGGAAGAGCTTCGAGTCTTCCCAGCCGATCCCTTTGACGAGGACATGCTTCACGCAGT AACAGAAGAAGGTATCGTTGCTGTCTCGAGAGGATGCCGAAAGCTCCACTACATCCTCTACTTCTGCCGTCAAATGACTAATGATGCCGTAGCAACAGTC GTCAAAAACTGCCCCGACTTCACCCACTTCCGTCTCTGTATCATGAACCCTGGCCAACCAGACCATGTCACCAACGAACCAATGGACGAAGCCTTTGGTG CGGTGGTCAAAACCTGCAAGAAGCTCCAGAGGCTCTCCGTCTCGGGGCTCCTCACCGATTCAACATTCCAATATATCGGTCGGTACGCGAAGAATTTGGA AACCCTATCGGTAGCCTTTGCTGGAAGCAGCGATCTCGGGATGCAGTCAGTTTTAGAAGGCTGCCCCAAGTTGAGGAAGCTCGAGATCCGAGACTGTCCC TTTGGGAACGCGGCGTTGCTTTCAGGGTTGGAGAAGTACGAGTCGATGAGATCGCTCTGGATGTCGGCTTGCAACGTGACGATGAGTGGGTGCAGGGTGT TGGCTAGGGAGATGCCGAGGTTGAATGTGGAAGTGATGAAGGAGGAAGGGAGCGATGATTGTAAAGCCGATAAGGTTTACGTTTATCGGACTGTCGCTGG GCCGAGAAGAGATGCTCCGCCGTCTGTGATGACCATCTCAAGTGTATGA
AA sequence Show only first row Show all	>Lus10006738 pacid=23163578 polypeptide=Lus10006738 locus=Lus10006738.g ID=Lus10006738.BGIv1.0 annot-version=v1.0 MDRSPKRTTTTNLFPDEVLERVLSLVKSHKDRSSVSLVCKDWYSAESWSRTHVTHVFIGNCYSVSPEIVVRRFPSIRSVTLKGKPRFSDFNLVPDNWGAD VQSWLEVFASEYPFLEELRLKRMRVTDKSLQFLAVKFPNFKALSLLSCDGFSTSGLAAVAAHCRNLTELDIQENGIEDSSGDWLSCFPDNFNTLEVLNFS NLNTDVNPEVLERLVSRCRSLKVLKVNRSISLDCLQRLLCYAPQLMELGAGSFSQELTPRQYSDLEHAFSLCKNLSVLSGLWEATTLNLSAIYPSCSRLT FLNLSYAALQSQELGSLLPHCPSLRRLWVLDSVGDKGLEAVGEKCPLLEELRVFPADPFDEDMLHAVTEEGIVAVSRGCRKLHYILYFCRQMTNDAVATV VKNCPDFTHFRLCIMNPGQPDHVTNEPMDEAFGAVVKTCKKLQRLSVSGLLTDSTFQYIGRYAKNLETLSVAFAGSSDLGMQSVLEGCPKLRKLEIRDCP FGNAALLSGLEKYESMRSLWMSACNVTMSGCRVLAREMPRLNVEVMKEEGSDDCKADKVYVYRTVAGPRRDAPPSVMTISSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	1.4	0.8535
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	2.8	0.8085
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	4.0	0.7619
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	13.8	0.7170
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10023691 [exp]	14.7	0.7042
					Lus10037674 [exp]	19.6	0.7241
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	28.9	0.7090
AT1G71080			RNA polymerase II transcriptio...		Lus10032448 [exp]	40.5	0.6658
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10028341 [exp]	48.9	0.7412
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	51.9	0.7029

Compare expression of checked genes

Lus10006738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.