Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05090 411 / 1e-142 Inositol monophosphatase family protein (.1) AT5G63980 130 / 4e-34 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G63990 129 / 6e-34 Inositol monophosphatase family protein (.1.2) AT5G09290 127 / 3e-33 Inositol monophosphatase family protein (.1) AT5G64000 127 / 4e-33 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G54390 120 / 1e-30 ATAHL, AHL HAL2-like (.1) AT3G02870 41 / 0.0008 VTC4 Inositol monophosphatase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007817 [exp] 371 / 1e-126 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10018453 [exp] 121 / 2e-30 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10011231 [exp] 117 / 1e-28 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10038597 [exp] 115 / 2e-28 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 108 / 3e-26 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10015663 [exp] 102 / 4e-24 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 100 / 1e-23 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033200 [exp] 422 / 8e-147 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.007G105100 [exp] 129 / 1e-33 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 128 / 2e-33 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G036400 [exp] 121 / 2e-30 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.011G124700 [exp] 117 / 2e-29 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 115 / 3e-28 AT5G54390 502 / 2e-177 HAL2-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10006739 pacid=23163538 polypeptide=Lus10006739 locus=Lus10006739.g ID=Lus10006739.BGIv1.0 annot-version=v1.0 ATGAATTTGGTTTACAACACCACCATCCATTTCTCTCCCTCCACGTCCTCCTCCGCCGTCGCCTCCTCCCTCCGCCGCCGCCTGACTCCTGTAAGGGCGA GTCTTCCATTTCCGACCCAGAAGGCAAAATACCATAAAGAGCTCGAAGCTGCCGTGGGCATTGTTGAGCGCGCTTGTCGTATTTGTGTCGATGTACAGAG GTCTTTGCTTTCAATCGATGGTGGGATTGTGGAGAAGAAAGACAACTCCCCAGTTACCGTTGCTGATTTTGGAGTCCAGGGTTTAATCAGCTACGAGTTG GGGAGGCTGTTCCCGTCTATTCCATTGGTTGCTGAAGAGGACTCTGGGTTTGTGAGAGCTAATAACCTGGTTGATTCTGTTGTTAGTGTTGTTAATGACA AGATAACCTCGGATAAACCTTTGTCTGATGATGTTGTTCTTGAGGCAATTGATAGAGGGGGAAGTGCTGGTAGTTCATTTGGTAAGGAGCCTGCTACATA TTGGGTGCTAGATCCAATCGATGGCACCAAAGGGTTCCTCAAAGGAGGTGGAGCATTATATGTGGTGGGTTTGGCTCTTGTAGTTGAAGGAGAGATTGTG GCAGGCATTATGGGCTGCCCAAACTGGCAGAACTCTGAATCGTCAAGTGAACTTGGTGCTGTGATGATTGCTCATGCTGGATGCGGAACATGGACAAAGA CATTACAGGATGCCAGTGGTTGGATTAGATGCTCTGTGGATGGATTCTCCTTGGTATCAAAGTCTCGATTTTGCATCCCCGAAAGTCAAAGCTGGAAGTC ATTGCCTCTATCAGGTTCATTTGATACAACATATGATGCAGATGGCATTGGAAACCATGAAGTTCATCTTATGACTACATGCTGTGGAAGTTTATGCAAG TATTTAATGGTGGCTTCAGGCAGGGCTTCAGTCTACATTCAAGCTCAGAGAGAGCCAATCCTCAAGTCCTGGGATCATGCTGTTGGTGTGATATGTGTTC ATGAAGCTGGAGGGAAGGTAAGTGACTGGGGAGGGAGTGAACTTGACCTTGCCGTAGATGAAGCTGAGAGAAGGATCATATATCCACCTGGGGGAATCCT TGTGACCAATGGCAGCATACATAAGGAGATTCTGGATATTATCTCCTTAAGCTCCTCCGTTGTTTAA
AA sequence Show only first row Show all	>Lus10006739 pacid=23163538 polypeptide=Lus10006739 locus=Lus10006739.g ID=Lus10006739.BGIv1.0 annot-version=v1.0 MNLVYNTTIHFSPSTSSSAVASSLRRRLTPVRASLPFPTQKAKYHKELEAAVGIVERACRICVDVQRSLLSIDGGIVEKKDNSPVTVADFGVQGLISYEL GRLFPSIPLVAEEDSGFVRANNLVDSVVSVVNDKITSDKPLSDDVVLEAIDRGGSAGSSFGKEPATYWVLDPIDGTKGFLKGGGALYVVGLALVVEGEIV AGIMGCPNWQNSESSSELGAVMIAHAGCGTWTKTLQDASGWIRCSVDGFSLVSKSRFCIPESQSWKSLPLSGSFDTTYDADGIGNHEVHLMTTCCGSLCK YLMVASGRASVYIQAQREPILKSWDHAVGVICVHEAGGKVSDWGGSELDLAVDEAERRIIYPPGGILVTNGSIHKEILDIISLSSSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	0	1
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	6.4	0.7420
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	8.0	0.6726
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10001023 [exp]	15.9	0.6064
AT3G07700			Protein kinase superfamily pro...		Lus10012317 [exp]	16.9	0.6091
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	18.3	0.6164
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	19.8	0.6826
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	22.3	0.6844
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	24.5	0.6351
AT5G36260			Eukaryotic aspartyl protease f...		Lus10020201 [exp]	29.5	0.6204
AT1G67750			Pectate lyase family protein (...		Lus10011400 [exp]	29.5	0.6309

Compare expression of checked genes

Lus10006739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.