Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00990 427 / 6e-137 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G21430 369 / 6e-114 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT1G62310 274 / 3e-79 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 265 / 6e-76 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 203 / 2e-54 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT3G07610 174 / 2e-44 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020084 [exp] 1538 / 0 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020033 [exp] 420 / 5e-133 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10027890 [exp] 375 / 6e-115 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 352 / 2e-107 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 254 / 5e-71 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 224 / 2e-61 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 223 / 1e-60 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10025380 [exp] 179 / 8e-47 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 152 / 7e-40 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032700 [exp] 897 / 0 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 870 / 0 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G091200 [exp] 421 / 2e-131 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.011G009700 [exp] 405 / 6e-126 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 381 / 8e-118 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 340 / 5e-105 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 278 / 2e-79 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 281 / 3e-79 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 259 / 2e-72 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10006741 pacid=23163560 polypeptide=Lus10006741 locus=Lus10006741.g ID=Lus10006741.BGIv1.0 annot-version=v1.0 ATGGGTCTCTGCCGGACCACCTCCGGTGCAAGCGTTTTGCCTGGGAAGAGGGATGTGGTTGAAGTTAGGGGAGGGAAGAAGATGAAGAAGAAGAAGTGCT GCCATTGGTGTAGGAAGAGTGGTTTGAGTAATTTGATAAGATGCTCCAGTTGTAGGAAGGAGTTCTTCTGTACCGACTGCATCAAAGACCAGTACTTTGA TGAGCAAGAAGAAGTTGAGACTGCTTGTCCAGTGTGTCGTGGAGCTTGTGGCTGTAAGGCCTGCACAGCAATTCGATTCAGGGACAGAGAATATGAGGAA GTCTCTAATGAGGGAAGAGAAGTTAACAAGGTTTTGTATTTCCATTATATGATCTGTATGTTGCTTCCGATGCTGAAACAAATGAACAAGGACCTTGCTG CTGAAACGAAGATGGAGGCCAAAATAAGAGGTATAAATCCTTGCGAAATTCAAGTCCAGCAGGCTAAAGTAAGCAGCAACCAACGTTCGTGGTTTGTTCT TTTCTTTCTCCAGATCTATGATGATCAGATTTCACAGTTTCAATTCATTAGTTCTTCACCAGAGTTCTTACTTTCTTGCTTCTCTGTCATGCGATGCAGT AATAATTGCAAGGTCTCGATTGCGGATTTCCATAGAAGCTGCCAAAGTTGCTCCTATAACTTGTGTTTGAGTTGTTGTCAAGGTGTTCTCCAAACGAGCT TTCGTAGAAATGGCAATTCACTTGCTACCAAATACTCTACTAGAAGGAAAGCTCTCATTTCCAGCATACAATCGCCGGAGATGATAACATTATGCACCAA TAAAACGAGATTTCTTGGTAATCGTCTCAGGTCTCCGATAGATTTTGATGGTTGTGATGGTATATCTTGTCCCCCTTCTGAGTTTGGTGGTTGTGGCAAT AGCCTGCTTGAGCTAAGCTGCATTTTCCCATCAAGTCAGGCTACGGAGCTGGAAACAAGTGCAGAAGAGCTTATTGGCTGCTATGAGTTGCCAGAAACCT TGGACATCGACTCTAGCTGTTCATTATGTACTGAAACTGACCTTGAAACCGACGAGACTAAGAAGTCACTAGAAGCCTCCGCAAGAGAAGATTCGCATGA CAATCTCTTGTACTGTCCTAGTGTACTAGACATTACTGGTGATAACATCGAACACTTCCAGAAACATTGGGGCAAAGGTCAACCAGTCAAAGTCCGCAAT GTGCTTCTCGGTACATCTGATCTCAGCTGGGATCCAATTGTCATGTTCTGCACTTATCTTAAGAATAACACTGGTGCACCTGTCGATGCCAAGGATTGCT TGGACTACTTTGAGGTTGAAATTGGTGTCCGGCAGCTATTCATGGGATCCGTCAGGGCTCCAAAGAATGCAAATATGTGGCATGAGGGCCTGAAGTTGAA GGGATGGCTCTCTTCTCATGTAATTCAAGAACATCTTCCAGCTCATTACGCCGAAGTTCTTCATGCTCTACCGCTTCCAGAATACATGGATCCCACATCG GGTGTATTAAATGTAGCAGCAGAGTTGCCACAGGAAATCTCGAAGCCTGATTTGGGTCCTTGCATCTATATCTCATACAACAGTGGGGAGAATAATATCC TGGCTGATTCAGTCTCCAAATTACGATATGATACATATGACATGGTTAACATCCTGGTGCATGCCGCTGATGCTCGTGTATCGACAGAACAGCTTAACTA CATACGAAAGTTGATGAAAAAGAACAGTGAAAATAATAGAGGGAACGGGGAAGCACTCCCTGATCGAGGAAACATTGACGAATTAAGATTGCACGACCTG GTCCAGGAACATACTCAATTACACAACAAAGTTGCTAGAGTATCTTGGTTCACTGCTTCGGGGCATGGACCTATTGAACAAGATCCCGGAGCCTTGCATG ATCGAGTGCCTCCAAACTCCGATTCAGATTCTGACACCAATACTGATACTGATTCAGATACAGATACAGACACAGATAGTGAAATATCAAATTTTTTGTT TTCCCACGTCAAAGGCTCAAGAACTTCAGATCACCCGCGCATGGAAACTTCCGGAAACGATCCTGTAACAGAGAAACATGATGAATCTTGTGGAGCCATA TGGGATGTGTTCCGTAGACAGGATGTTCCTAAGCTTGTGGAGTATCTAAGACTGCAGTGCAACAAATTTGCAGATGGATATGGTTCCAGAAAACAACAAG TTACTCATCCATTGCATGATCAAATATTCTTCCTCGACGCAGTTCATAAAAGGAGGCTTAAGGAGGAGTTCGAGATCGAACCTTGGACTTTTGAGCAACA CGTAGGAGAAGCTGTCATTGTTCCTGCTGGATGTCCTTATCAGATTACGAATCTCAAGTCGTGTGTTAATGTGGTGCTGGACTTTGTATCTCCCGAAAGT GTGACTCATTCCATCCAATTGATTGATGACCTGCGGCTGCTTCCGGATCGTCACAAAGCCAAAGTTGACTGCTTAGAGGTGAAGAAAATGGCTCTCCACG GAGTCAGTCGAGCCATTAAAGAAATCCGTGAGCTTACATCATCCACTGAATAA
AA sequence Show only first row Show all	>Lus10006741 pacid=23163560 polypeptide=Lus10006741 locus=Lus10006741.g ID=Lus10006741.BGIv1.0 annot-version=v1.0 MGLCRTTSGASVLPGKRDVVEVRGGKKMKKKKCCHWCRKSGLSNLIRCSSCRKEFFCTDCIKDQYFDEQEEVETACPVCRGACGCKACTAIRFRDREYEE VSNEGREVNKVLYFHYMICMLLPMLKQMNKDLAAETKMEAKIRGINPCEIQVQQAKVSSNQRSWFVLFFLQIYDDQISQFQFISSSPEFLLSCFSVMRCS NNCKVSIADFHRSCQSCSYNLCLSCCQGVLQTSFRRNGNSLATKYSTRRKALISSIQSPEMITLCTNKTRFLGNRLRSPIDFDGCDGISCPPSEFGGCGN SLLELSCIFPSSQATELETSAEELIGCYELPETLDIDSSCSLCTETDLETDETKKSLEASAREDSHDNLLYCPSVLDITGDNIEHFQKHWGKGQPVKVRN VLLGTSDLSWDPIVMFCTYLKNNTGAPVDAKDCLDYFEVEIGVRQLFMGSVRAPKNANMWHEGLKLKGWLSSHVIQEHLPAHYAEVLHALPLPEYMDPTS GVLNVAAELPQEISKPDLGPCIYISYNSGENNILADSVSKLRYDTYDMVNILVHAADARVSTEQLNYIRKLMKKNSENNRGNGEALPDRGNIDELRLHDL VQEHTQLHNKVARVSWFTASGHGPIEQDPGALHDRVPPNSDSDSDTNTDTDSDTDTDTDSEISNFLFSHVKGSRTSDHPRMETSGNDPVTEKHDESCGAI WDVFRRQDVPKLVEYLRLQCNKFADGYGSRKQQVTHPLHDQIFFLDAVHKRRLKEEFEIEPWTFEQHVGEAVIVPAGCPYQITNLKSCVNVVLDFVSPES VTHSIQLIDDLRLLPDRHKAKVDCLEVKKMALHGVSRAIKEIRELTSSTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	0	1
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	2.0	0.9402
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	2.0	0.9396
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	2.2	0.9234
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	4.5	0.9177
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	5.2	0.9270
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	5.7	0.9148
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	6.2	0.9053
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	6.9	0.9078
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10024381 [exp]	7.1	0.9078
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	9.5	0.9194

Compare expression of checked genes

Lus10006741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.