Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 779 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 764 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 641 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 623 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 603 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61480 585 / 0 S-locus lectin protein kinase family protein (.1) AT1G61490 584 / 0 S-locus lectin protein kinase family protein (.1) AT1G61550 583 / 0 S-locus lectin protein kinase family protein (.1) AT1G61500 580 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 580 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 965 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 946 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 941 / 0 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 607 / 0 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 585 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 581 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 578 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 573 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 570 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037600 [exp] 881 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 876 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 860 / 0 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 852 / 0 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027400 [exp] 642 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 635 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 635 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 630 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 630 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 629 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10006742 pacid=23163550 polypeptide=Lus10006742 locus=Lus10006742.g ID=Lus10006742.BGIv1.0 annot-version=v1.0 ATGCTCTTCCTCGTACTCTCTTGCTCCTCTGCTACAATCACCCGGCTGACCAGAGATCAACCATTAAAAGACGGCGACACCCTCGTTTCCGACGTCGGAG GAGGTGGCAGATTCACATTGGGCTTCTTCAGTCCATCTTCAAGTTCTCAACGCTATTTGGGAATATGGTATAACGACGACCCCCAATTTGGTCGCGCCGT CATTTGGGTAGCCAACAGAGATAGACCCATCCCCGACCAAACTGGTTCGTTGACCATTTCCGCTGACTGGAATCTAATCCTCTCCGACGGAAACGGCAGC TCAGTTTGGTCAACCCGAGCTACGATTACAGCTCCTCCTGCGGCGGCCCTTCTGTCTCCTACGGGGAATCTATTTCTCTCCCCAATCGGAGATTCCAAAA CTTCCTACTGGCAGAGCTTCGACATTCCAACTGACACGTTCTCCCCTGGGATGAAAGTACTAGTCGACGCCTCTGTCGGACCGGTGGTCAACGCCTTCCG GTCGTGGAAATCCCTTGAGGATCCTTCTCCAGGGAAGTTCACCATGGGGATTGACCCGCAAGGTGCGCCGCAGATCGTGATCTGGGAGAATCTCGAACGT CGGTGGAGAAGCGGTATGTGGAATGGATTGGCCTTCACAGGGATGATGAACAATGCTGCTGCGTCTACGAGTTACTTGTACGGATTCAGGCTCTCTCCTA AGGACGACGGGAGGGTTTATTTCTCCTACGTTCCGTCAAATCCGACAGATTCGGTGAGGTTCCGTGTGGATTGGGGCGGCAATTTAGAGCAGCTTCGGTG GAATCGTACCCGGAATTTGTGGGATGTGGCGGATAGGCAGCCGGCCGGCGATTGCCAGCGGTACAATTTCTGCGGGAAATTTGGGGTTTGTGATGAATTG GGACGGCCCAAGTGCAAATGCATTGAGGGTTTTCGGCCGGCGAATTTGGGGGAGTGGAGTAGAGGGAATTGGTCCGGCGGGTGTGAGAGGACTGAATCGC TGCGTTGCCAGAGCCGAGGCGGCGGCGATGAGGAAGAAGGTGGAACGATTAATGAGGACAAATTTAACGAGTTAAGATGTGGGAAGCTGCCGGATTTTGC GAATTTACGGAGTTTTCGGTCGCCGGAATCTTGCCGGCGGGCTTGCTTAACGGAATGCGAGTGTCATGGTTACGCGATGATGATGGGGATTGGTTGCGTA TTGTGGACGGTGGATATGGTTGATGTCGTTCATTTCAATGGCTCTAACAATGTTCTTTACCTGCGGATGCCTAATTCTGAACCAGGTGGTAGCAGGAATT TGTCAAGACCAAAGAGAGTATCAGGAGGTGTGATAGCAGGCATTGTAGCTGGGGGAGTGGTTGGTTTAGCCGCAGCAGCGTTGCTGCTCTGTTGCGGAAT TAGAAGAAAGAGGCTCAAAGGTGAATCTGAGATGCCGTTGAATGATGCAATGAAGAACAGCAGTGCGTATTCGACTGCCGAACTTACTGAAGGTGGGGAC ATCAGTCATGTTGATACGCAATTGTTCAGTTTCGGCCTGCTGGCGCTCGCGACAGATGAGTTTTCTATGGAGAACAAGTTGGGTCAGGGTGGGTTTGGCC CTGTTTACAAGGGAAGGCTTCCAGGAGGAGAGGAAATCGCTGTGAAGAGGCTGTCGAAAATATCCGGGCAAGGTCTGGAGGAGTTCAAGAATGAAATCAG CTTGATCGCAAAATTACAGCACAGGAATTTGGTTAGGTTGCAAGGGTACTGTGTTCATGACGAGGAAAAGATGTTGATATACGAGTACATGCCCAACAAA AGTTTGGACTTCTTTCTCTTTGACCCAGCAAAGCAAGCATCTTTGAGTTGGAGGAAACGCTTGACGATTATCGAAGGAATAGCGAGAGGCCTCCTTTACC TTCACCGAGATTCGAGACTCAGAGTCATTCATCGAGATTTGAAGGCCAGCAATGTCCTGCTCGACGAGGAAATGAATCCCAAGATCTCGGATTTCGGAAT GGCAAGAATCTTCGGTGGCAATCAAAACGAAGCCAACACCAATCGAGTAGTTGGGACATACGGGTACATGTCACCCGAATACGCAATGGAAGGCCTGTTC TCGGTTAAGACGGATGTTTACAGCTTTGGAATATTGGTTCTCGAGATCGTGAGTGGAAGGAAGAACACAAGCTTTCGATTCTCCGACCATGTCAGCCTAA TCGCATACGTTTGGGAGTTGTGGAGCCAAGGCAGAGCAATCGAGATTGTGGATTCATCGATTCGAGATTCATGCACGCATGACGAAATGCTGAGGTGCAT ACAAGTAGGGATACTGTGTGTGCAAGGAGACCCGGTTCATCGACCGACGATGGCGGAGGTGATGCTGATGATGGAAAAGGATAGCCAAAGCTTGCCAATG CCGAGGCAGCCTACTTTCACTTCTTCGACGAGAAGAGGTTCTGTATACAGAGATGTCGATTCGGAAGATCCTAATTTCCTTTACCAGCGCGTTTTCGACG ATCAGAATGAAGATCCAAACACTCGGATCCTGATTACCCTAGCTACCCCATTGGAGGAGGATCGAAATCATTATCTTTACACTTCTATTTCCTATGATTC TCTGCTTATTGATGCTACTTTCTGCGAATTCCCGAATGAACCTCTCTACCTATCCTATGTATCCAAGTTGAGGTTGAGCTCCTGCGGAGGAGGGTTGACT TGCTTAGAATACGAGGACTGGACGACCGAAGGAGTCTGTCCAATTATTGCGTTGTTTGATCCGGCCGCTCCCGATACAAAGATGCTTCCTCCTCTGCCTG ATCTACTTAATAGAAACGACTACTATCTGGATCGGAGCAGTATCGGTTTTGCTCCCATGGAGAAAGACGACAAAGATCAGGAAGATGATCACCGCTACAA AGTCGTTTATGCTCGCCACTATCTTTACAGACAAGAAGGATCTCATTATCGCGGTTTCAATAAGGTTTATGTATTCTCATCAGAAGACGATTTGGGTTGG AGGGAATTACTGTCCCCAGACGATTCTTCTTCATCTGTGTTGCCACAGCAGTTAGAGCTACGGGATGACATTCCTCAGTATGGTTGTTGTGCGGCGAAGA GAAAGTGTTACTGGATAGCAAAGGAACTCTCAAGCCGTGCCATCTACGATCTTATTGGTTCGACCGAGTACAGAGGTGATTTAACAGGTCGGGGGAGCCT TGCCTTTCACTTACAGGGGAGATGGCTACCTGCCGTATGTGTGCATGGAAAAGGAGGAGGCTTTGGTGGTTTTCAATATAGCCAAGGAGGTGGTGGTATT ACAACCGTTGGACGATCCCGGAAAATCTTGGTGCAAGCTATTTACTTTCCAATTTTCCCACCGTATAAGAATGGATTGGAGCTAGAGATTGAGGATTCTA GGAGTGTCCAAACATGGCAAAGTGATATTTACAGAAGGTGA
AA sequence Show only first row Show all	>Lus10006742 pacid=23163550 polypeptide=Lus10006742 locus=Lus10006742.g ID=Lus10006742.BGIv1.0 annot-version=v1.0 MLFLVLSCSSATITRLTRDQPLKDGDTLVSDVGGGGRFTLGFFSPSSSSQRYLGIWYNDDPQFGRAVIWVANRDRPIPDQTGSLTISADWNLILSDGNGS SVWSTRATITAPPAAALLSPTGNLFLSPIGDSKTSYWQSFDIPTDTFSPGMKVLVDASVGPVVNAFRSWKSLEDPSPGKFTMGIDPQGAPQIVIWENLER RWRSGMWNGLAFTGMMNNAAASTSYLYGFRLSPKDDGRVYFSYVPSNPTDSVRFRVDWGGNLEQLRWNRTRNLWDVADRQPAGDCQRYNFCGKFGVCDEL GRPKCKCIEGFRPANLGEWSRGNWSGGCERTESLRCQSRGGGDEEEGGTINEDKFNELRCGKLPDFANLRSFRSPESCRRACLTECECHGYAMMMGIGCV LWTVDMVDVVHFNGSNNVLYLRMPNSEPGGSRNLSRPKRVSGGVIAGIVAGGVVGLAAAALLLCCGIRRKRLKGESEMPLNDAMKNSSAYSTAELTEGGD ISHVDTQLFSFGLLALATDEFSMENKLGQGGFGPVYKGRLPGGEEIAVKRLSKISGQGLEEFKNEISLIAKLQHRNLVRLQGYCVHDEEKMLIYEYMPNK SLDFFLFDPAKQASLSWRKRLTIIEGIARGLLYLHRDSRLRVIHRDLKASNVLLDEEMNPKISDFGMARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLF SVKTDVYSFGILVLEIVSGRKNTSFRFSDHVSLIAYVWELWSQGRAIEIVDSSIRDSCTHDEMLRCIQVGILCVQGDPVHRPTMAEVMLMMEKDSQSLPM PRQPTFTSSTRRGSVYRDVDSEDPNFLYQRVFDDQNEDPNTRILITLATPLEEDRNHYLYTSISYDSLLIDATFCEFPNEPLYLSYVSKLRLSSCGGGLT CLEYEDWTTEGVCPIIALFDPAAPDTKMLPPLPDLLNRNDYYLDRSSIGFAPMEKDDKDQEDDHRYKVVYARHYLYRQEGSHYRGFNKVYVFSSEDDLGW RELLSPDDSSSSVLPQQLELRDDIPQYGCCAAKRKCYWIAKELSSRAIYDLIGSTEYRGDLTGRGSLAFHLQGRWLPAVCVHGKGGGFGGFQYSQGGGGI TTVGRSRKILVQAIYFPIFPPYKNGLELEIEDSRSVQTWQSDIYRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	0	1
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	3.7	0.9579
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	5.0	0.9684
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	5.9	0.9524
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	9.0	0.9547
AT5G49690			UDP-Glycosyltransferase superf...		Lus10027850 [exp]	12.0	0.9392
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	12.7	0.9487
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	12.8	0.9438
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	13.2	0.9478
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	16.7	0.9463
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	17.2	0.9463

Compare expression of checked genes

Lus10006742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.