Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49710 179 / 2e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 171 / 1e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 159 / 6e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 158 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39680 155 / 1e-44 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 154 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 154 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 151 / 3e-43 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 151 / 5e-43 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 150 / 8e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020081 [exp] 305 / 4e-101 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 167 / 3e-51 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035157 [exp] 149 / 1e-46 AT3G26782 221 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 159 / 1e-45 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 157 / 2e-45 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020588 [exp] 148 / 1e-44 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022629 [exp] 154 / 2e-44 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 154 / 3e-44 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 154 / 7e-44 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012500 [exp] 215 / 1e-66 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 174 / 3e-51 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 166 / 1e-48 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 159 / 4e-46 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G075000 [exp] 157 / 1e-45 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G237100 [exp] 157 / 2e-45 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 155 / 5e-45 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 157 / 6e-45 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 155 / 7e-45 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G354400 [exp] 155 / 7e-45 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006743 pacid=23163574 polypeptide=Lus10006743 locus=Lus10006743.g ID=Lus10006743.BGIv1.0 annot-version=v1.0 ATGCGAGAGCGAGGAGTGAAAAAGCTTCCGGGATGCAGTTGGCTCGAGTTACAGAAGAAGGTGCATGTTTTCATAGCAGAAGACAATTCACATCCGATGA TGAACCCGATTCGCGACTATGTGAACTGGATAATGATGAAGATCAAACAAGCTGGATATGTGCCGGATCTGAGATGTGCATTGGTTAAAGATGACGATGA GAAGACACGGGAAGCGAATAAAGAGATGAGTTTAAGGCATCATAGTGAGAAACTGGCCGTTGCATTCGGACTGATGTCGGCTAAAGACGGGGTGCCTATA ACTGTGATGAAGAACTTAAGGATATGTGGGGATTGTCACAATGCAATGAAGTACATTTCTGCTGTTAGTTGTAGGAAAATTACTGTGAGGGATGCCAATA GGTTTCATTGTTTTGAACAAGGCCATTGTTCTTGTGGAGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10006743 pacid=23163574 polypeptide=Lus10006743 locus=Lus10006743.g ID=Lus10006743.BGIv1.0 annot-version=v1.0 MRERGVKKLPGCSWLELQKKVHVFIAEDNSHPMMNPIRDYVNWIMMKIKQAGYVPDLRCALVKDDDEKTREANKEMSLRHHSEKLAVAFGLMSAKDGVPI TVMKNLRICGDCHNAMKYISAVSCRKITVRDANRFHCFEQGHCSCGDYW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	3.9	0.8062
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	5.5	0.7767
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	5.7	0.7967
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	7.7	0.7865
AT3G11591			unknown protein		Lus10032336 [exp]	10.4	0.7088
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	11.7	0.7902
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	13.2	0.7811
AT1G17120		CAT8	cationic amino acid transporte...		Lus10013705 [exp]	15.1	0.6974
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	15.7	0.7615
AT3G63390			unknown protein		Lus10024829 [exp]	17.7	0.7349

Compare expression of checked genes

Lus10006743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.