Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 765 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 728 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 663 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 627 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 624 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 586 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 573 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 572 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G27300 545 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 544 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006746 [exp] 1347 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 1106 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 699 / 0 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 677 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 645 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007603 [exp] 645 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 637 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 627 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 625 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028701 [exp] 929 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 918 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 917 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 689 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 680 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 676 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 673 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G035600 [exp] 671 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G036400 [exp] 668 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 667 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10006745 pacid=23163576 polypeptide=Lus10006745 locus=Lus10006745.g ID=Lus10006745.BGIv1.0 annot-version=v1.0 ATGGTACTGTGGCAGAGCTTCGATTACCCGACCGACACTCTGCTTCCGTACATGAAACTGGGTTTTGACCGGAGGACCGGGTTGAACCGGTCGGTTACGT CTTGGAAATCGGAGACGGACCCAGGTTTGGGTTCGGTTAATTATCGGATAGATCCGACTGGGTATCCTCAGCTCTTTTTATACAAGAATCACTCGGTTCC CTCATGGCGGGGTGGACCATGGACCGGGTTACGATGGAGCGGGGTTCCGGAAATGACGAAGAATTTTATATTCAATGTGAGCTACGTAAACGACGAGAAC GAGGTATCGATACTATACGGGATCACTAATCCGTCAATTTTATCAAGGATGTACGTGGAGGAATCGGGTGTGGTGAAGCGGGCTACGTGGAACGGACACA GTTGGAATGAGTTTTGGTCCGCTCCGAAGGAACAGTGTGACAATTACGGGACGTGTGGACCCAATAGCAATTGCGATCCGTCCAAACCGGATACATTCTA CTGCAAGTGCCTACCAGGGTTCGAACCGAAATCGAGCCAGGATTGGTTTTTGAGAGACGGGTCGGGTGGGTGCGTGAGGAAGCCAGGAGCCAAGTCTACA TGTCGGAGCGGGGAAGGATTTGTGAAGGTGGCGAATGTAAAAGTGCCTGACACATCAACTGCACGAGCGGATAAGAGTTTAGGATTGAAAGCGTGCGAGG AAGAGTGTTTGAAGAACTGCACGTGTGAAGCTTACACGAGCGCGGACGAGCGAGGGATAGGGTGCTTAAGATGGTACGGTGACTTGGTGGACACAAGGAG TTATGCCATTGGTGGTGGGCAAGACATTTATATTAGGGTGGACGCCGATGTGTTAGCTGCATACAACAAGCCTAAGGGTCCGCTTCACAATGCTGGAATG AAGGCACTGCTGATAATTTCAGTTGCAGTGATTCTATTCCTTGTAATTTTCCTGGCTTTTTGCCTCATAAGGAGATACAAGAAAGCTCGAGACAGGGTGG ACAAACTTTCGTTCTACTTCGACACCACCAACCCGGATGACTCCATGAGCCAGAAGAATGGCAATGTCGATTTGCCATTCTTCCATCTCAGTGAGATAGC AGCTGCCACGAACAATTTCTCTGACGAGAACAAGCTTGGAGAAGGCGGATTTGGGTCCGTCTACAAGGGTACGTACAAAGGGAACGAAATAGCAGTGAAA AGGCTTTCGAAATATTCAGGACAAGGTGGTGAGGAATTCAAGAACGAGGTGGAGTTGATTGCGAAGCTACAACACAGAAATCTTGTTAGGATTCTTGGTT GCTGCGTGCAAGGACACGAGAAGATGCTGCTCTATGAATATTTGCCCAACAAAAGTTTGGACTACTTCATTTTTGACGAGGGTAAGAAGGCATTGTTAGA TTGGCCGATTCGGTACAACATTATATGTGGAATAGCTCGAGGGATCTTGTACCTACACGAAGATTCAAGACTAAGAATCATACATAGAGATCTCAAGGCT AGTAATGTCTTACTTGATGTTTCCATGAACCCAAAAATATCAGATTTTGGAATGGCTCGAATCTTCGGGACGAATCAAAATGAAGCCAACACAAACCGTG TGGTCGGTACCTATGGTTATATGTCGCCAGAGTACGCAATGCAAGGGGTATTTTCAGTGAAATCAGATGTATACAGCTTCGGTGTTCTATTACTCGAGAC AATCACTGGAAGAAAGAATAATAGTTACTATGAAGAGATGACATCTTCAAGTTTGGTTGGATACACTTGGGAGCTATGGAAAGAAGACAGAGCACTAGAC ATAGTGGATTCGTCGTTGGGAAACTCTTACCCGGTGGAAGACGTGCTTAGGTGCATCCAGATTGGGTTACTGTGTGTTCAGGAATCAGCGGTAGATCGGC CGAATATGTTCGACGTTGTATTCATGCTATGTAACATCGAGACGACTCCACCGACTCCAAAGAGACCGGCGTTCATATTGAAGAGAAGTTACCATAGCGG TTCGCTGTTGACCGGAACTACTACTACCGATGGCATCTACTCCGTGAATGACGTTACAGTTACTATGCTTGAAGCTAGGTAG
AA sequence Show only first row Show all	>Lus10006745 pacid=23163576 polypeptide=Lus10006745 locus=Lus10006745.g ID=Lus10006745.BGIv1.0 annot-version=v1.0 MVLWQSFDYPTDTLLPYMKLGFDRRTGLNRSVTSWKSETDPGLGSVNYRIDPTGYPQLFLYKNHSVPSWRGGPWTGLRWSGVPEMTKNFIFNVSYVNDEN EVSILYGITNPSILSRMYVEESGVVKRATWNGHSWNEFWSAPKEQCDNYGTCGPNSNCDPSKPDTFYCKCLPGFEPKSSQDWFLRDGSGGCVRKPGAKST CRSGEGFVKVANVKVPDTSTARADKSLGLKACEEECLKNCTCEAYTSADERGIGCLRWYGDLVDTRSYAIGGGQDIYIRVDADVLAAYNKPKGPLHNAGM KALLIISVAVILFLVIFLAFCLIRRYKKARDRVDKLSFYFDTTNPDDSMSQKNGNVDLPFFHLSEIAAATNNFSDENKLGEGGFGSVYKGTYKGNEIAVK RLSKYSGQGGEEFKNEVELIAKLQHRNLVRILGCCVQGHEKMLLYEYLPNKSLDYFIFDEGKKALLDWPIRYNIICGIARGILYLHEDSRLRIIHRDLKA SNVLLDVSMNPKISDFGMARIFGTNQNEANTNRVVGTYGYMSPEYAMQGVFSVKSDVYSFGVLLLETITGRKNNSYYEEMTSSSLVGYTWELWKEDRALD IVDSSLGNSYPVEDVLRCIQIGLLCVQESAVDRPNMFDVVFMLCNIETTPPTPKRPAFILKRSYHSGSLLTGTTTTDGIYSVNDVTVTMLEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	0	1
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	1.7	0.8794
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	2.4	0.8676
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	4.0	0.8251
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	4.9	0.8303
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	10.2	0.8329
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	11.5	0.8108
					Lus10007551 [exp]	11.7	0.7770
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	14.5	0.7934
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	14.7	0.7804
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	16.5	0.7980

Compare expression of checked genes

Lus10006745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.