Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 832 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 793 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 706 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 669 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 664 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 650 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 627 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 623 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 605 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 602 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006745 [exp] 1348 / 0 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 1231 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 780 / 0 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 769 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 704 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 698 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10041680 [exp] 696 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10038557 [exp] 696 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 691 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028701 [exp] 1016 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 1002 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 998 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 777 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 756 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 756 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 753 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 751 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 744 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 740 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10006746 pacid=23163580 polypeptide=Lus10006746 locus=Lus10006746.g ID=Lus10006746.BGIv1.0 annot-version=v1.0 ATGAATCCATTTTTACTCCTCTTCTTTCTTCTCTGTTATTCTTCTTCTACTTCATCATTCAATTCCGACACACTGAAACAAGACAAACCCCTCCTAGACG GCGACGTTCTTATCTCCGGCGGCCAAACTTTCACCCTCGGCTTCTTTTCCGTTCCGCAGAACTCGACCCCTAGGTATCTCGGAATATGGTACAACCGAGT TTCCGAACAAACCGTCGTCTGGGTAGCGAACAGAGAAGCTCCACTCAACGACACCTCCGGCCGCCTCGCCGTCGATTCCAACGGCTATCTCAACCTCTAT GCCGGAAATAATACTTACCCAATTTGGTCGGCGAAGTTTACAACTCCTCCTGGGAACAATTCAGTCGCTAGGCTTCTCGATTCGGGGAATCTCGTTGTGT TGCAAGAACGTTCGTCGGGGACAATGGTACTGTGGCAGAGCTTCGATTACCCGACCGACACTCTGCTTCCGTACATGAAACTGGGTTTTGACCGGAGGAC CGGGTTGAACCGGTCGGTTACGTCTTGGAAATCGGAGACGGACCCAGGTTTGGGTTCGGTTAATTATCGGATAGATCCGACTGGGTATCCTCAGCTCTTT TTATACAAGAATCACTCGGTTCCCTCATGGCGGGGTGGACCATGGACCGGGTTACGATGGAGCGGGGTTCCGGAAATGACGAAGAATTTTATATTCAATG TGAGCTACGTAAACGACGAGAACGAGGTATCGATACTATACGGGATCACTAATCCGTCAATTTTATCAAGGATGTACGTGGAGGAATCGGGTGTGGTGAA GCGGGCTACGTGGAACGGACACAGTTGGAATGAGTTTTGGTCCGCTCCGAAGGAACAGTGTGACAATTACGGGACGTGTGGACCCAATAGCAATTGCGAT CCGTCCAAACCGGATACATTCTACTGCAAGTGCCTACCAGGGTTCGAACCGAAATCGAGCCAGGATTGGTTTTTGAGAGACGGGTCGGGTGGGTGCGTGA GGAAGCCAGGAGCCAAGTCTACATGTCGGAGCGGGGAAGGATTTGTGAAGGTGGCGAATGTAAAAGTGCCTGACACATCAACTGCACGAGCGGATAAGAG TTTAGGATTGAAAGCGTGCGAGGAAGAGTGTTTGAAGAACTGCACGTGTGAAGCTTACACGAGCGCGGACGAGCGAGGGATAGGGTGCTTAAGATGGTAC GGTGACTTGGTGGACACAAGGAGTTATGCCATTGGTGGTGGGCAAGACATTTATATTAGGGTGGACGCCGATGTGTTAGCTGCATACAACAAGCCTAAGG GTCCGCTTCACAATGCTGGAATGAAGGCACTGCTGATAATTTCAGTTGCAGTGATTCTATTCCTTGTAATTTTCCTGGCTTTTTGCCTCATAAGGAGATA CAAGAAAGCTCGAGACAGAGCGGAGAATAAACTTTCGTTCTACTTCGACACCACCAACCCGGATGACCAGAAGAATGGCAATGTGGATTTGCCATTCTTC CATCTCTCCGAGATAGCAGCCGCCACGAACAACTTCTCTGACGAGAACAAGCTTGGAGAAGGCGGATTTGGGTCCGTCTACAAGGGTACGTACAAAGAGA ACGAAATAGCAGTGAAAAGGCTTTCGAAATATTCAGGACAAGGTGGTGAGGAATTCAAGAACGAGGTGGAGTTGATTGCGAAGCTACAACACAGAAATCT TGTTAGGATTCTTGGTTGCTGCGTGCAAGGACATGAGAAGATGCTGGTCTATGAATATTTGCCCAACAAAAGTTTGGACTACTTCATTTTTGACGAGGGT AAGAAGGCATTGTTGGATTGGCCGATTCGGTACAACATTATATGTGGAATAGCTCGAGGGATCTTATACCTGCACGAGGATTCGAGGCTAAGAATCATAC ATAGAGATCTTAAAGCTAGTAACGTCTTACTTGATGTCTCCATGAACCCGAAAATATCAGATTTTGGAATGGCTCGAATCTTTGGAACGGATCAAAATGA AGCCAATACAAACCGTGTGGTCGACAATTTGGATGTAATCGATAGTGGTTACATGTCACCAGAGTACGCCATGCAAGGAATGTTTTCAGTGAAATCAGAT GTATACAGTTTTGGCGTTTTATTGCTTGAAACAGTCGCTGGAAGAAAAATTAGCAGTTATTACGAAAAGACGACTCCTTCAAGTTTGATTGGATACACTT GGGAGCTATGGAAAGAAGACAGAGCACTAGACATAGTGGATTCATCGTTGGGAAACTCTTACCCGGTGGAAGACGTGCTTAGGTGCATCCAGATTGGATT ACTGTGTGTCCAGGAATCAGCGGCAGATCGGCCGAACATGTTCGACGTTGTATTCATGCTATGTAACATTGAGACGATTCCTCCGGCACCAAAGAAACCG GCGTTTGTATTGAAGAGAGAATACCATAGCGGTTCACCGTTGATAGGGAGTAGTTCTACCGATGGCGTCTACTCCGTGAACGGCGTCACTCTTACTATGC TTGAAGTTAGGTAG
AA sequence Show only first row Show all	>Lus10006746 pacid=23163580 polypeptide=Lus10006746 locus=Lus10006746.g ID=Lus10006746.BGIv1.0 annot-version=v1.0 MNPFLLLFFLLCYSSSTSSFNSDTLKQDKPLLDGDVLISGGQTFTLGFFSVPQNSTPRYLGIWYNRVSEQTVVWVANREAPLNDTSGRLAVDSNGYLNLY AGNNTYPIWSAKFTTPPGNNSVARLLDSGNLVVLQERSSGTMVLWQSFDYPTDTLLPYMKLGFDRRTGLNRSVTSWKSETDPGLGSVNYRIDPTGYPQLF LYKNHSVPSWRGGPWTGLRWSGVPEMTKNFIFNVSYVNDENEVSILYGITNPSILSRMYVEESGVVKRATWNGHSWNEFWSAPKEQCDNYGTCGPNSNCD PSKPDTFYCKCLPGFEPKSSQDWFLRDGSGGCVRKPGAKSTCRSGEGFVKVANVKVPDTSTARADKSLGLKACEEECLKNCTCEAYTSADERGIGCLRWY GDLVDTRSYAIGGGQDIYIRVDADVLAAYNKPKGPLHNAGMKALLIISVAVILFLVIFLAFCLIRRYKKARDRAENKLSFYFDTTNPDDQKNGNVDLPFF HLSEIAAATNNFSDENKLGEGGFGSVYKGTYKENEIAVKRLSKYSGQGGEEFKNEVELIAKLQHRNLVRILGCCVQGHEKMLVYEYLPNKSLDYFIFDEG KKALLDWPIRYNIICGIARGILYLHEDSRLRIIHRDLKASNVLLDVSMNPKISDFGMARIFGTDQNEANTNRVVDNLDVIDSGYMSPEYAMQGMFSVKSD VYSFGVLLLETVAGRKISSYYEKTTPSSLIGYTWELWKEDRALDIVDSSLGNSYPVEDVLRCIQIGLLCVQESAADRPNMFDVVFMLCNIETIPPAPKKP AFVLKREYHSGSPLIGSSSTDGVYSVNGVTLTMLEVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10006746 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	6.4	0.8281
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	11.0	0.7565
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	11.5	0.7861
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	17.5	0.8259
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	18.5	0.7888
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	21.9	0.7859
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	22.1	0.8120
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10034504 [exp]	27.0	0.7984
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	29.1	0.7469
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	29.4	0.8071

Compare expression of checked genes

Lus10006746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.