Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21350 344 / 7e-117 PUB8, B80 plant U-box 8 (.1) AT1G23030 144 / 4e-38 PUB11 ARM repeat superfamily protein (.1) AT3G46510 144 / 8e-38 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 135 / 4e-35 ATPUB14 plant U-box 14 (.1) AT1G71020 131 / 5e-34 ARM repeat superfamily protein (.1.2) AT2G28830 132 / 2e-33 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 129 / 1e-32 PUB15 Plant U-Box 15 (.1) AT3G07360 107 / 2e-25 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 106 / 5e-25 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 100 / 1e-22 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020077 [exp] 562 / 0 AT4G21350 413 / 6e-144 plant U-box 8 (.1) Lus10000804 [exp] 192 / 1e-60 AT4G21350 127 / 1e-35 plant U-box 8 (.1) Lus10016565 [exp] 149 / 1e-39 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 147 / 9e-39 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 142 / 2e-37 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10037970 [exp] 139 / 2e-36 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016016 [exp] 139 / 4e-36 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10025885 [exp] 128 / 5e-33 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10043471 [exp] 127 / 4e-32 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028800 [exp] 386 / 1e-133 AT4G21350 379 / 8e-131 plant U-box 8 (.1) Potri.011G033300 [exp] 379 / 1e-130 AT4G21350 405 / 7e-141 plant U-box 8 (.1) Potri.009G029600 [exp] 145 / 1e-38 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 144 / 4e-38 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 144 / 8e-38 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G165900 [exp] 142 / 2e-37 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 139 / 2e-36 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 138 / 6e-36 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 137 / 1e-35 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.010G185900 [exp] 137 / 3e-35 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10006747 pacid=23163551 polypeptide=Lus10006747 locus=Lus10006747.g ID=Lus10006747.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTCCTCCCCACCACCTCCCAGACGACTTCAAGTGCCCGATCTCCCTCGAAGTAATGTCCGACCCAGTAATCCTCTCCTCCGGCCACACTT TCGACCGTCCTTCAATCCAACGCTGGATAGACTCCGGCCACCGTACTTGCCCCATCACTAACCTCCCTCTCCCTCAACACCCTTCCCTTATCCCTAACCA CGCCCTCCGCTCCCTCATCTCCAATTACTCCCAAATCCCCTTACCCCCAAAATCCCCATTTCCCAAATCCCAATCCCCACAAACCCTAATCTCCAATCTC ACCTCCCGATCATCACCCAAACTCGAGTCCTTATCCCACCTCGCGAAGCTCACCAAATCCTCCCCTTCCCTCCGCCGCCTCGTCACCGAATCCGGCGCCG TGTCCTCCATCCTCTACTGCGTCGATTCCCCCATTTCCCCTCCTGTTCTTGAAAAGGCGCTATCTTTACTCCTAAACCTCTCCTTAGACGACGATAGCAA GGTGGGTTTGGTTGCGGAGGGGGCGATCGGGAGAGTAATTAGGGTTTTGCAGTCCGGTACTCATGATTGCAGAGCGATCGGCTGCACGATCCTAACAAGC TTGGCAGTGGTGGAGGTGAATAAGGCGACGATCGGGGACTACCCCAACGCGATTCGATCGCTGGTGAATTTGTTGGAGGTCGGGAAAGGGAGGGAGATTA AGGAGGCGGCGACTGCGCTGTACGCGATCTGCTCGTTTCCGGATAACCGGAGGAAAGCGGTGGAGTGCGGTTCGGTTCCGGTTTTGGTTCGGTTGGTCAA GAATGGGATGGAAAGAGCTGTGGAGGTGTTGAGCTGTTTGGTTAAGTGTAAAGAAGGGAGATTGGAAATGGGGAAAGTTTTGGGATTTGTGGAGGTTCTG GTTAAGGTGGTGTGTAATGGGAGGAGCAGTGGGAAAGGAGTGCAATGTGCTTTGTTTACGCTGAATTCGCTGTGTTTCTACGACGAGGAGGCTCGCGACG AGGCTAGGAGGTTAGGGGTGGTGGAGGTTTGTGTTGGGTTGGGGGAGGATGAGAATGACAAGGTTAGGAGGACTGCTGAGTGTTTGGTTCAAACTCTGAG GTTGGACTAG
AA sequence Show only first row Show all	>Lus10006747 pacid=23163551 polypeptide=Lus10006747 locus=Lus10006747.g ID=Lus10006747.BGIv1.0 annot-version=v1.0 MASPPPHHLPDDFKCPISLEVMSDPVILSSGHTFDRPSIQRWIDSGHRTCPITNLPLPQHPSLIPNHALRSLISNYSQIPLPPKSPFPKSQSPQTLISNL TSRSSPKLESLSHLAKLTKSSPSLRRLVTESGAVSSILYCVDSPISPPVLEKALSLLLNLSLDDDSKVGLVAEGAIGRVIRVLQSGTHDCRAIGCTILTS LAVVEVNKATIGDYPNAIRSLVNLLEVGKGREIKEAATALYAICSFPDNRRKAVECGSVPVLVRLVKNGMERAVEVLSCLVKCKEGRLEMGKVLGFVEVL VKVVCNGRSSGKGVQCALFTLNSLCFYDEEARDEARRLGVVEVCVGLGEDENDKVRRTAECLVQTLRLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	0	1
AT3G12630		SAP5	stress associated protein 5, A...		Lus10037702 [exp]	1.4	0.8939
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	2.8	0.8526
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	2.8	0.8794
AT5G58020			unknown protein		Lus10036615 [exp]	3.5	0.8616
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	3.9	0.8776
					Lus10018015 [exp]	5.0	0.8672
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	5.7	0.8713
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10007654 [exp]	7.9	0.8581
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	11.5	0.8426
AT4G40042			Microsomal signal peptidase 12...		Lus10037014 [exp]	12.5	0.7348

Compare expression of checked genes

Lus10006747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.