Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27270 296 / 2e-103 Quinone reductase family protein (.1) AT5G54500 295 / 1e-102 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT4G36750 249 / 2e-83 Quinone reductase family protein (.1) AT5G58800 235 / 6e-79 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020076 [exp] 360 / 3e-128 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10018401 [exp] 342 / 3e-121 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10007612 [exp] 342 / 1e-120 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10041718 [exp] 250 / 6e-84 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10026035 [exp] 242 / 4e-81 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10014325 [exp] 242 / 5e-81 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10005862 [exp] 228 / 2e-76 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2) Lus10040486 [exp] 205 / 9e-67 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10024032 [exp] 174 / 1e-55 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028900 [exp] 303 / 7e-106 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.011G129400 [exp] 302 / 1e-105 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.011G033100 [exp] 302 / 2e-105 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.001G410700 [exp] 301 / 3e-105 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.009G044400 [exp] 247 / 6e-84 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2) Potri.005G126200 [exp] 242 / 5e-81 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.007G029600 [exp] 241 / 2e-80 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.004G151100 [exp] 222 / 5e-73 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10006748 pacid=23163571 polypeptide=Lus10006748 locus=Lus10006748.g ID=Lus10006748.BGIv1.0 annot-version=v1.0 ATGAACTGCTGCTGGCCTAATGTCTTGTGCAGTTACTATTCTATGTATGGACATGTTGAGCAATTAGCTGAAGAGATTCAGAAAGGAGCTTCAACTGTGG ATGGTGTTGAAGTTAAACTATGGCAGGTAGCAGAGACACTGCCGGAAGAGGTTCTTGGCAAAATGGGTGCGCCAGCAAAGAAGAGTGAAGTGCCAATCAT CACTGCCAGTGAGCTTGCTGAAGCTGATGGCATTCTTTTCGGGTTCCCTACTCGGTTCGGGATGATGGCTGCTCAATTCAAGGCGTTCATGGACTCAACT GGAGGCCTTTGGAAGACACAGGCGCTTCAAGGGAAGCCTGCTGGACTCTTCTACTCCACTGGCTCTCAAGGTGGTGGCCAGGAGACCACCCCGTTGACAG CGATCACGCAGCTAGTTCACCACGGAATGTTGTTCGTGCCGGTGGGATACACATTCGGAGGAGGGATGTTCGAGATGGAAGAGGTGAAAGGGGGGAGTCC ATATGGTGCAGGGACATTTGCAGGAGATGGATCCAGGCAGCCTAGTGAGCTTGAGTTGGGTTTGGCTCATCACCAGGGCAAGCATTTTGCTGCCATCGCC AAGAAATTGAAGGGTTCTGAATCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10006748 pacid=23163571 polypeptide=Lus10006748 locus=Lus10006748.g ID=Lus10006748.BGIv1.0 annot-version=v1.0 MNCCWPNVLCSYYSMYGHVEQLAEEIQKGASTVDGVEVKLWQVAETLPEEVLGKMGAPAKKSEVPIITASELAEADGILFGFPTRFGMMAAQFKAFMDST GGLWKTQALQGKPAGLFYSTGSQGGGQETTPLTAITQLVHHGMLFVPVGYTFGGGMFEMEEVKGGSPYGAGTFAGDGSRQPSELELGLAHHQGKHFAAIA KKLKGSESDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	0	1
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	2.0	0.9177
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	4.8	0.9197
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	6.0	0.8748
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	11.0	0.8886
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	12.5	0.8553
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	17.4	0.8620
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	22.0	0.8602
AT4G20820			FAD-binding Berberine family p...		Lus10032943 [exp]	24.0	0.8773
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10025291 [exp]	25.2	0.8957
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	26.1	0.8595

Compare expression of checked genes

Lus10006748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.