Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61667 162 / 5e-52 Protein of unknown function, DUF538 (.1) AT5G54530 132 / 5e-40 Protein of unknown function, DUF538 (.1) AT3G07470 104 / 4e-29 Protein of unknown function, DUF538 (.1) AT5G16380 102 / 6e-28 Protein of unknown function, DUF538 (.1) AT3G07460 98 / 3e-26 Protein of unknown function, DUF538 (.1.2) AT1G55265 79 / 7e-19 Protein of unknown function, DUF538 (.1) AT2G03350 53 / 4e-09 Protein of unknown function, DUF538 (.1) AT4G02360 48 / 2e-07 Protein of unknown function, DUF538 (.1) AT4G02370 48 / 2e-07 Protein of unknown function, DUF538 (.1) AT5G37070 40 / 0.0002 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020075 [exp] 218 / 7e-74 AT1G61667 178 / 6e-58 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 192 / 2e-63 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 190 / 1e-62 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 106 / 9e-30 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 107 / 2e-29 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 105 / 1e-28 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 103 / 3e-28 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 102 / 6e-28 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10039620 [exp] 97 / 2e-25 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032600 [exp] 159 / 2e-50 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 152 / 9e-48 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 141 / 2e-43 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 137 / 4e-42 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 103 / 2e-28 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 102 / 4e-28 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 97 / 3e-26 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 94 / 8e-25 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 91 / 1e-23 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 68 / 1e-14 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10006749 pacid=23163552 polypeptide=Lus10006749 locus=Lus10006749.g ID=Lus10006749.BGIv1.0 annot-version=v1.0 ATGACTTCCATTACCATTCTCTCCATCTCCCTCCTCCTCCTAACCATCCCCTCCTGCTCCTTCACCACCGCCGCATCATCATCCTCGTCCCTACAACGAC TCCTCCACAGCCGGGGGCTCCCCGGCGGAGTGTTCCCCAACAATGTGAACTCATTCGACCTCGACCCCACCACCGGTCTGCTCGAGGTCCAGCTGGACGG ACCCTGCTTGGCCAAATTCGAGAACAGGGTATTCTTCGAGAGCGTCATTCGGGCCAACCTCAGCTTCGGTGGGCTGATCGGGTTGGAGGGTCTGACTCAG GAGGAGCTCTTTCTTTGGTTCCCTGTGCAAGGGCTCTACGTTAGAAATCCGAATTCCGGTGTCATATTGATGGATATTGGTCTTGCTCGTAAACGGCTCC CCATTTCTCTGTTTGAAGATCCCCCTTCTTGCGTGAAAGCTCAAGGTACTAACTAG
AA sequence Show only first row Show all	>Lus10006749 pacid=23163552 polypeptide=Lus10006749 locus=Lus10006749.g ID=Lus10006749.BGIv1.0 annot-version=v1.0 MTSITILSISLLLLTIPSCSFTTAASSSSSLQRLLHSRGLPGGVFPNNVNSFDLDPTTGLLEVQLDGPCLAKFENRVFFESVIRANLSFGGLIGLEGLTQ EELFLWFPVQGLYVRNPNSGVILMDIGLARKRLPISLFEDPPSCVKAQGTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61667			Protein of unknown function, D...		Lus10006749 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	6.5	0.6604
AT5G20610			unknown protein		Lus10025003 [exp]	8.4	0.6383
					Lus10008327 [exp]	10.2	0.6383
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	11.8	0.6383
					Lus10010697 [exp]	13.2	0.6383
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	14.5	0.6383
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	15.4	0.6302
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	16.2	0.6233
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	19.0	0.6142
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	20.7	0.6071

Compare expression of checked genes

Lus10006749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.