Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61720 90 / 3e-22 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 59 / 4e-11 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT2G45400 52 / 2e-08 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 51 / 2e-08 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G35420 49 / 2e-07 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT4G27250 46 / 1e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G80820 42 / 4e-05 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT2G02400 39 / 0.0004 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 39 / 0.0005 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G76470 38 / 0.001 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020072 [exp] 141 / 8e-42 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006195 [exp] 58 / 6e-11 AT5G42800 269 / 6e-90 dihydroflavonol 4-reductase (.1) Lus10041031 [exp] 57 / 4e-10 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004030 [exp] 54 / 2e-09 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032369 [exp] 54 / 4e-09 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10006141 [exp] 50 / 7e-08 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10004028 [exp] 44 / 8e-06 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023096 [exp] 40 / 0.0001 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1) Lus10004029 [exp] 40 / 0.0001 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030700 [exp] 111 / 2e-30 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 107 / 6e-29 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G138400 [exp] 61 / 8e-12 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.005G229500 [exp] 61 / 9e-12 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.001G093300 [exp] 61 / 1e-11 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 59 / 6e-11 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G033600 [exp] 59 / 7e-11 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.006G087200 [exp] 57 / 2e-10 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 53 / 5e-09 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 53 / 6e-09 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006750 pacid=23163555 polypeptide=Lus10006750 locus=Lus10006750.g ID=Lus10006750.BGIv1.0 annot-version=v1.0 ATGAAAGCTTGCGCCAAGGCCAAAACGGTGAAAAGGGTGGTGCTTACTTCCTCTGCAGCAGCAGTTACTATTAATAATGTTGAGGGAACCGGTTTGGTCA TGGACGAGAATCACTGGACCGACGTTCACTTTCTAACTTCAGACAAGCCTCCAACTTGGGATGTGTGTAGAGCACATTTGTTTGTTGCGGAGAAGGAATC TGCTTCTGGCCGATTCATATGCTGTGCTGCCAATACTAGTGTCGCTGAGCTTGCCAAATTCCTCAGCTTGAGATATCCACAGTACAAAGTCCAGCCCCAG ATTGGAGATGTTCCGGAACAGGCGAAGCTGACGATTTCTTCAGATAAGCTGATCGGAGAAGGATTCAAGGACTGGAGGATACAGCTTGTAAAGTGA
AA sequence Show only first row Show all	>Lus10006750 pacid=23163555 polypeptide=Lus10006750 locus=Lus10006750.g ID=Lus10006750.BGIv1.0 annot-version=v1.0 MKACAKAKTVKRVVLTSSAAAVTINNVEGTGLVMDENHWTDVHFLTSDKPPTWDVCRAHLFVAEKESASGRFICCAANTSVAELAKFLSLRYPQYKVQPQ IGDVPEQAKLTISSDKLIGEGFKDWRIQLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10006750 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	7.7	0.9286
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	10.8	0.9268
AT5G07810			SNF2 domain-containing protein...		Lus10015736 [exp]	12.5	0.8699
AT3G03000			EF hand calcium-binding protei...		Lus10004539 [exp]	14.4	0.9213
AT1G30050			unknown protein		Lus10035609 [exp]	16.6	0.9209
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	18.4	0.9188
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	20.6	0.9170
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10031389 [exp]	21.6	0.7550
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	22.3	0.9170
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	23.8	0.9170

Compare expression of checked genes

Lus10006750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.