Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05180 247 / 9e-80 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 234 / 1e-74 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT1G61720 123 / 2e-31 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61740 99 / 4e-22 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 97 / 5e-22 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 92 / 5e-20 Sulfite exporter TauE/SafE family protein (.1) AT5G42800 91 / 9e-20 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G09510 82 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 82 / 8e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 81 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020071 [exp] 364 / 7e-126 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 280 / 1e-92 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 270 / 1e-88 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10020072 [exp] 215 / 1e-65 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020068 [exp] 132 / 1e-33 AT1G61740 371 / 2e-125 Sulfite exporter TauE/SafE family protein (.1) Lus10026070 [exp] 87 / 9e-19 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 88 / 1e-18 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10008668 [exp] 87 / 1e-18 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 89 / 2e-18 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031500 [exp] 238 / 3e-76 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.011G031300 [exp] 232 / 8e-74 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.004G030700 [exp] 152 / 1e-41 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 147 / 5e-40 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G030900 [exp] 108 / 3e-25 AT1G61740 413 / 2e-141 Sulfite exporter TauE/SafE family protein (.1) Potri.005G229500 [exp] 94 / 6e-21 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G033600 [exp] 93 / 2e-20 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G147702 [exp] 90 / 1e-19 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 84 / 1e-17 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 81 / 1e-16 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01925 [flax] [poplar] TauE Sulfite exporter TauE/SafE CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family CL0063 [flax] [poplar] PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10006751 pacid=23163579 polypeptide=Lus10006751 locus=Lus10006751.g ID=Lus10006751.BGIv1.0 annot-version=v1.0 ATGGCATTCCTAGCAGGGATACTAGGAGGAGATTTCGACATTGGAGGTGGGATGCTCATCAGCCCACTCCTTCTCCAAGTTGGCATATCAGCCGAGGTAA CAGCAGCAACTTGCTCTTTCATGGTGTTCTTTTCATCGAGTATGTCGGTCTTTCAGTACCTGATGTTGGGGATGGATCATACTAATGCTGCAATCGTCAT CTCTGCTATGTGTTTTGTAGCATCGCTGCTTGGATTGCTGGTGGTGCATAGAGCTATTAAGCAATACGGCAAAGCTTCAGTTATAGTGTTCTTGGTTGCA ACTGTAATGGCTCTGATCAACCATTCTGGCCTCCTCGTTATATCAATTCAGAGGATAAGGCAAACTCCTTCAGCGTCGAACCAATCTACATCACAAACAC GACACACATACTTCGACAAAGATACCAAATTTCTCACCGCCGGCAGCCGGAGAGACAAAATGGCCCAGTCAATTGCTTCATCGATGTGTGGCTCCACCAC CCGATTGAACATAGCTACTACCGCTGGCCGACTATCCGCCGTGGCCCGACCCAGTCTCACGGTTCGAGCCCAACAGCAGACTGCAGTTGCTGAGACTAAC CGACGGTCCATGATAGGCCTCATTGCCGTGGGTTTGGCTTCTGGTTCTTTCGCTCAGGCTGTGCTCGCCGAAGCCAATGCAATCAGGGTTGGACCGCCTC CGCCTCTTTCCGGTGGCCTACCGGGGACGGAGAACTCAGATCAGGCGAGGGACCTGGATTTGCCACTAAAGGAGAGGTTCTACCTACAGCCACGTACCCC AGAAGAAGCAGCAGCAAGGGTGAAAGTGTCGGCTAACGAGATAGTGAACGTGAAGAGTTTCATCGACAAGAAGGCCTGGCCATATGTGATGAACGACCTT CGTCTTAGGGCATCGTATCTTCGCTACGACCTCAAAACCGTGATCTCAGCCAAGCCTAAGCCAGAGAAACAAGCCCTCAAAGACCTCACTGGAAAACTTT TCCAGAGCATCAACAACTTGGATTATGCGGCGAAGATCAAGAGCAGTGCTCAGGCAGAGAAGTATTATGCTGAGACTACGTCGAAGATGGCCACACCTAC CACTGTCGTCGAGCCTCCCCCGGGAAAGAAAACTTCATGTGTGATAGGAGGCACCGGCTTCGTGGCGTCTAGGCTGATCAAATTGTTCTTGGAAAACGGC TACTCAGTTCGGACCACTGTCCGGAACCCTGACAACCAGAGGAGGATTTCACACCTGATACCGCTGAAAGAATTGGGGGAGCTGGAGATTTTCGCAGCAG AGTTAACTGACGAGGAGAGTTTCATCTCTCCGGTGGCAGGGTCCGACTTGGTATTCCTCGTCGCAACTCCGGTTAATTTTGCTTCTAAAGATCCAGAGAA TGACACATGA
AA sequence Show only first row Show all	>Lus10006751 pacid=23163579 polypeptide=Lus10006751 locus=Lus10006751.g ID=Lus10006751.BGIv1.0 annot-version=v1.0 MAFLAGILGGDFDIGGGMLISPLLLQVGISAEVTAATCSFMVFFSSSMSVFQYLMLGMDHTNAAIVISAMCFVASLLGLLVVHRAIKQYGKASVIVFLVA TVMALINHSGLLVISIQRIRQTPSASNQSTSQTRHTYFDKDTKFLTAGSRRDKMAQSIASSMCGSTTRLNIATTAGRLSAVARPSLTVRAQQQTAVAETN RRSMIGLIAVGLASGSFAQAVLAEANAIRVGPPPPLSGGLPGTENSDQARDLDLPLKERFYLQPRTPEEAAARVKVSANEIVNVKSFIDKKAWPYVMNDL RLRASYLRYDLKTVISAKPKPEKQALKDLTGKLFQSINNLDYAAKIKSSAQAEKYYAETTSKMATPTTVVEPPPGKKTSCVIGGTGFVASRLIKLFLENG YSVRTTVRNPDNQRRISHLIPLKELGELEIFAAELTDEESFISPVAGSDLVFLVATPVNFASKDPENDT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	0	1
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	1.0	0.9730
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	2.0	0.9462
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	3.5	0.9291
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	5.2	0.9375
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	7.1	0.9342
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	9.2	0.9369
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	9.4	0.9165
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	10.0	0.9183
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	11.1	0.8904
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	13.0	0.9029

Compare expression of checked genes

Lus10006751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.