Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 100 / 8e-25 receptor-like protein kinase-related family protein (.1) AT3G22060 93 / 3e-22 Receptor-like protein kinase-related family protein (.1) AT4G20670 84 / 8e-19 Domain of unknown function (DUF26) (.1) AT1G70690 84 / 1e-18 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G58310 83 / 2e-18 Domain of unknown function (DUF26) (.1) AT2G31620 82 / 3e-18 Receptor-like protein kinase-related family protein (.1) AT3G21990 78 / 9e-17 Domain of unknown function (DUF26) (.1) AT4G38830 79 / 2e-16 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT2G01660 76 / 4e-16 PDLP6 plasmodesmata-located protein 6 (.1.2) AT4G21230 78 / 5e-16 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027145 [exp] 93 / 5e-22 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10007632 [exp] 96 / 6e-22 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10038227 [exp] 88 / 4e-20 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10018380 [exp] 90 / 5e-20 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 81 / 6e-17 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10025875 [exp] 79 / 6e-17 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1) Lus10026629 [exp] 79 / 2e-16 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10020814 [exp] 78 / 2e-16 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10007631 [exp] 79 / 4e-16 AT4G23180 257 / 1e-76 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030500 [exp] 238 / 1e-77 AT5G48540 109 / 4e-28 receptor-like protein kinase-related family protein (.1) Potri.004G032000 [exp] 237 / 1e-77 AT3G22060 110 / 4e-29 Receptor-like protein kinase-related family protein (.1) Potri.011G030800 [exp] 218 / 3e-70 AT3G22060 105 / 5e-27 Receptor-like protein kinase-related family protein (.1) Potri.007G120300 [exp] 118 / 8e-32 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1) Potri.007G120600 [exp] 115 / 1e-30 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 112 / 1e-29 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 112 / 2e-29 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 109 / 1e-28 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.017G040450 [exp] 109 / 1e-28 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 107 / 7e-28 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10006752 pacid=23163554 polypeptide=Lus10006752 locus=Lus10006752.g ID=Lus10006752.BGIv1.0 annot-version=v1.0 ATGGAGGATTTCATTGGGATAAGAAACGCTCTATGTTTCACCACATCATTTCTAGCCTTAATCCATGGCTACACCCAAACCGATGTTAACCAACTCATGG GTTGCTCTTGCTCTGACCCGAAAAACACTACTGCAGTCGACTCCGAATACCAAACCCGCCTCGACTCTCTGCTCGATTCGTTGGCCAAACAAGCCCCACT ACGAAACGGGTTCTACCAAAACGAAGTCGGAAAGCACGACAACAAGAGGCTCTATGGCCTCGCCCAATGCCGAGGAGACATCTCGGCGACAAATTGCAAA AGTTGCATACTAAACGCCACGTCAGCTTCTGCGGTGGTCAACGGATGTGGGGCCTACAACCACGGCGTAATGATCTGGCTAAGGTGGTGTTTCCTACGTT ACTCGAACACAAGCTTCTACGGAACGTGGGATGAGACCGGGATATCAAGGACAAACGAAACGACACCGTTTGAGGACCCTAATGTGGTCTCACGAGGGGT CGAGCTAATGAATGGGTTATCGGTGACGACTCCACGCCAGGAATCGATGTACGAGACTAGGATGATCGATTTGGGGCCGAAAAGTGGGAGGAGGTACGGA ATGGCACAGTGCACGAGGGATATGGACGTGGAAGGATGTAGAGAATGTTTGGCGGCACAATTGGCGACGTTTAGGATGACAATCGGGAACAAGAGAGGGT GGGAGATTTATGGGTCGAGTTGTAGCTTGTGGTACCATGATTATCAATTCTATTTCAACTCCACTTTGGTCCCTGCAAGTAACCAAGGTAGCTGGAGGAG CAACCAGGTGAACTGGTTTGTTGTGGGGATGGTTATATTTGGCTATTTAGCTCTGTAG
AA sequence Show only first row Show all	>Lus10006752 pacid=23163554 polypeptide=Lus10006752 locus=Lus10006752.g ID=Lus10006752.BGIv1.0 annot-version=v1.0 MEDFIGIRNALCFTTSFLALIHGYTQTDVNQLMGCSCSDPKNTTAVDSEYQTRLDSLLDSLAKQAPLRNGFYQNEVGKHDNKRLYGLAQCRGDISATNCK SCILNATSASAVVNGCGAYNHGVMIWLRWCFLRYSNTSFYGTWDETGISRTNETTPFEDPNVVSRGVELMNGLSVTTPRQESMYETRMIDLGPKSGRRYG MAQCTRDMDVEGCRECLAAQLATFRMTIGNKRGWEIYGSSCSLWYHDYQFYFNSTLVPASNQGSWRSNQVNWFVVGMVIFGYLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48540			receptor-like protein kinase-r...		Lus10006752 [exp]	0	1
					Lus10003272 [exp]	6.1	0.8228
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	8.6	0.8228
					Lus10010826 [exp]	10.5	0.8228
					Lus10011629 [exp]	12.2	0.8228
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	13.2	0.7597
					Lus10022108 [exp]	13.6	0.8228
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	14.9	0.8228
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	15.1	0.7159
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	16.1	0.8228
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10025682 [exp]	17.2	0.8228

Compare expression of checked genes

Lus10006752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.