Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05220 263 / 2e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 236 / 1e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 82 / 5e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 76 / 1e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 76 / 2e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G22870 74 / 8e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 67 / 4e-13 NHL2 NDR1/HIN1-like 2 (.1) AT5G21130 66 / 8e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52460 66 / 9e-13 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020066 [exp] 458 / 1e-166 AT4G05220 261 / 6e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018376 [exp] 149 / 4e-45 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006755 [exp] 140 / 2e-41 AT4G05220 145 / 9e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020065 [exp] 135 / 2e-39 AT4G05220 135 / 1e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007636 [exp] 90 / 2e-22 AT4G05220 97 / 2e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 81 / 1e-18 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 71 / 1e-14 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 69 / 4e-14 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 68 / 1e-13 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023300 [exp] 287 / 6e-99 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 273 / 1e-93 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 79 / 7e-18 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 78 / 1e-17 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 79 / 3e-17 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G019600 [exp] 76 / 1e-16 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 74 / 8e-16 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 73 / 1e-15 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 72 / 2e-15 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 68 / 9e-14 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10006754 pacid=23163566 polypeptide=Lus10006754 locus=Lus10006754.g ID=Lus10006754.BGIv1.0 annot-version=v1.0 ATGTCCGCGGCAAACAACGGCCGGCTGCCGGTTCACCACGAACCCCGCATCAATAAACCGCTCGAGCGCCACCACACGGCTCGATACTACGCCCATCGGG TCAAGGAGAGCCTCACCACTAGGGTCTCAAAGGTCGTATGCTCTGTTTTCTTAACCATTCTTCTCCTCGTTGGCACTGTTGCTTTCGTCATGTGGCTAAG CCTGCGACCGCACCGCCCTAGGTTCTTCATCGAGGAATTCTCGGTTCCGGGTCTTGACCAACCAAACGGGTTCCAAAACGCTCAAATTAGATTCAATGTC ACGGTCCGGAACTCGAACAGGAAGATGGTGTTCCACTACGGGGCAATGCAAGGGTTGGTTTTCTACAAGGATCAGCAGATTGGGTCCGCCCAATTGACCG ACCCGTTTGACCAAGAGCCCAAGAGTACTATAATCCTGAACAAGGTCTTGAGCGGGGCTACACTGACGGTGACTAGCCGCCGTTGGGCGGAGGTCCAAGG AGATCGTTCATTAGGGAAGGTGCCGTTCCGTTTGGACATAACGGCGACCGTCATGTTCAAGGTGTCCACGTGGCACAGCGAGAACCATCGGGTGCATGCT AATTGTGATGTCTCCGTTGGCCCCGACGGCTCCATCTTGCCCATGTATAGAACCAAGAGATGTCCAGTTTATTTCACTTGA
AA sequence Show only first row Show all	>Lus10006754 pacid=23163566 polypeptide=Lus10006754 locus=Lus10006754.g ID=Lus10006754.BGIv1.0 annot-version=v1.0 MSAANNGRLPVHHEPRINKPLERHHTARYYAHRVKESLTTRVSKVVCSVFLTILLLVGTVAFVMWLSLRPHRPRFFIEEFSVPGLDQPNGFQNAQIRFNV TVRNSNRKMVFHYGAMQGLVFYKDQQIGSAQLTDPFDQEPKSTIILNKVLSGATLTVTSRRWAEVQGDRSLGKVPFRLDITATVMFKVSTWHSENHRVHA NCDVSVGPDGSILPMYRTKRCPVYFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05220			Late embryogenesis abundant (L...		Lus10006754 [exp]	0	1
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	9.1	0.8937
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	11.4	0.8878
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	14.3	0.8795
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	21.1	0.7798
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10029169 [exp]	21.8	0.8648
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	22.1	0.8771
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	25.1	0.8736
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10009897 [exp]	25.5	0.8529
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	26.5	0.8723
AT1G23530			unknown protein		Lus10030608 [exp]	26.7	0.8739

Compare expression of checked genes

Lus10006754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.