Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05220 145 / 7e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 129 / 2e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 61 / 2e-11 NHL3 NDR1/HIN1-like 3 (.1) AT4G01410 58 / 2e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G20600 55 / 3e-09 NDR1 non race-specific disease resistance 1, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 52 / 5e-08 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35460 46 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 45 / 6e-06 NHL2 NDR1/HIN1-like 2 (.1) AT1G08160 42 / 6e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 42 / 7e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020065 [exp] 355 / 6e-127 AT4G05220 135 / 1e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018376 [exp] 206 / 5e-68 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 140 / 1e-41 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020066 [exp] 137 / 1e-40 AT4G05220 261 / 6e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007636 [exp] 112 / 1e-31 AT4G05220 97 / 2e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 64 / 1e-12 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 63 / 5e-12 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 56 / 1e-09 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 53 / 1e-08 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027400 [exp] 138 / 6e-41 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 138 / 8e-41 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 67 / 1e-13 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 67 / 1e-13 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 62 / 6e-12 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 57 / 9e-10 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G003800 [exp] 55 / 2e-09 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218300 [exp] 55 / 3e-09 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 54 / 4e-09 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071200 [exp] 47 / 2e-06 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10006755 pacid=23163537 polypeptide=Lus10006755 locus=Lus10006755.g ID=Lus10006755.BGIv1.0 annot-version=v1.0 ATGGCCAAACAAACGGACCGTCCCACCAAGCTACATTTCTCGATCTGCTTCACAGTCCTCTTCTTCATCGGTCTCATCCTTCTAATCTGCTGGCTCAGCC TACGTCCGCACGGACCCATAATCCACATCCACAATTTCGCCATCGTGGGTGCTGGTCAAGCTCAAACCAACGGGCTCAAATCCACTCGAATAGTGTACAA TGTGTCCGTTCGGAACCCAAATCAGCACATGTGGATCTCGTACACCACTTTGACCACGGTCCTATACCACGACGGGCAGCTGATCGGTTCGACTCCATCG TTTAATTCGTTTGATCAGGAGCCGAAGAACACGTTGTACATCGACCACGTGCTGACCGGGGCTGCAATTTTGTCGGGGAACAGAGATGACCGTTGGATGG ACGTAATGAGCAATGGTGGGCAAGGAAGGGTTGAGTTTGGTTTGGAGTTGAAGTCAAGTTTGAGGTATGAGAGAACAATGTGGGATTTGAGGAGGCATTA TGTTCATGCTAAGTGTGAAGTTCCAGTGGGTAAAGATGGGACTTTATTGCCTGAGTTCCAAGGCAGGGAATGTTCTTTGTAA
AA sequence Show only first row Show all	>Lus10006755 pacid=23163537 polypeptide=Lus10006755 locus=Lus10006755.g ID=Lus10006755.BGIv1.0 annot-version=v1.0 MAKQTDRPTKLHFSICFTVLFFIGLILLICWLSLRPHGPIIHIHNFAIVGAGQAQTNGLKSTRIVYNVSVRNPNQHMWISYTTLTTVLYHDGQLIGSTPS FNSFDQEPKNTLYIDHVLTGAAILSGNRDDRWMDVMSNGGQGRVEFGLELKSSLRYERTMWDLRRHYVHAKCEVPVGKDGTLLPEFQGRECSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	0	1
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	1.0	0.9550
AT2G37925		COPT4	copper transporter 4 (.1)		Lus10021108 [exp]	2.4	0.9443
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	2.8	0.9425
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	3.5	0.9464
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	3.5	0.9210
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	3.9	0.9335
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	4.7	0.9042
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	6.7	0.9115
AT5G08391			Protein of unknown function (D...		Lus10032032 [exp]	8.8	0.8864
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	9.7	0.8324

Compare expression of checked genes

Lus10006755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.