Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01190 374 / 2e-130 Peroxidase superfamily protein (.1) AT5G15180 369 / 6e-128 Peroxidase superfamily protein (.1) AT1G05260 336 / 3e-115 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 326 / 3e-111 Peroxidase superfamily protein (.1) AT3G21770 320 / 1e-108 Peroxidase superfamily protein (.1) AT1G05250 299 / 9e-101 Peroxidase superfamily protein (.1) AT1G05240 299 / 9e-101 Peroxidase superfamily protein (.1) AT5G64120 258 / 1e-84 Peroxidase superfamily protein (.1) AT4G36430 256 / 1e-83 Peroxidase superfamily protein (.1) AT5G51890 253 / 2e-82 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018374 [exp] 477 / 9e-171 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 475 / 6e-170 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10031548 [exp] 344 / 2e-118 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 342 / 1e-117 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 333 / 6e-114 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 332 / 1e-113 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10027164 [exp] 327 / 9e-112 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 321 / 2e-109 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10020064 [exp] 299 / 1e-101 AT1G05260 198 / 1e-62 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027300 [exp] 431 / 1e-152 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 425 / 3e-150 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 418 / 2e-147 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 414 / 6e-146 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 372 / 3e-129 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 370 / 2e-128 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 370 / 2e-128 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 370 / 2e-128 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 370 / 2e-128 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 367 / 3e-127 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10006756 pacid=23163559 polypeptide=Lus10006756 locus=Lus10006756.g ID=Lus10006756.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCAAGGGCTTGTTGGCTCTGTTACTCCTCCAAATTTGCTTCACCTTTACGTCCGCAAATCCACTACTGAAAGTGGGTTACTACGCAAAAA CATGCCCAAATGCTGAGGCAATTGTCAAGGAGGTTACTGATAAAGTCATGTACGTGGCTCCTAGCCTCAGCGGTCCTTTGCTCAGGATGCACTTCCACGA TTGCTTCATTCGGGGATGTGACGCTTCGGTTTTGATAGATTCGACAAAACACATCCCAGCTGAAAAGGACGCGTTCCCGAATCTCAGCCTTAGAGGGTTT GGAGTCGTCAACCGAGTAAAGGCAGCCCTCGAGATGGAGTGTCCGGGCATCGTCTCGTGCTCCGATATCCTAGCAATCGTAGCTAGGGATGTTACAGTCG CGACGAAAGGGCTACGATGGGAAGTGGAGACGGGTCGAAAAGACGGAAGGATATCGATCATGAACGAGGCGCTATTCGGCCTAATCCCACAGTCGGCGAA CATCTCCTTCTTGATCTCAAGCTTCAAAGCTCTCGGACTTTCCATCAAGGACTTGGTTGTGCTACAAGGAAGCCACACCATAGGAATCTCCCATTGCTCT TCCTTCACCAACAGAATCTACAACTTCACAGGAAACGACGACGTGGACCCTACCCTGGACTCCGAGTATATACCCAACCTGAGACGGAAATGTAGAACGG CGACGGATCAGACGACGGTGGTGGAAATGGACCCTGGAAGCTTCAAGACATTTGACAATGGGTACTTCAAGCTTGTCGCCAAAAGGAGGGCTCTGTTCCC GTCAGACGCGGCCTTGATGGACAACGAAGAGACTAAGGCTTATGTCGAGAAGTCGCTGACCTCTGGATCGACTTTCTTGAAGGACTTTGGCGATTCCATG GTTAAGATGGGGAGGATCGGCGTCCTAACCGGGGATGCCGGTGAGATCAGGGAAGTTTGTTACAAGATTAATGAATGA
AA sequence Show only first row Show all	>Lus10006756 pacid=23163559 polypeptide=Lus10006756 locus=Lus10006756.g ID=Lus10006756.BGIv1.0 annot-version=v1.0 MAASKGLLALLLLQICFTFTSANPLLKVGYYAKTCPNAEAIVKEVTDKVMYVAPSLSGPLLRMHFHDCFIRGCDASVLIDSTKHIPAEKDAFPNLSLRGF GVVNRVKAALEMECPGIVSCSDILAIVARDVTVATKGLRWEVETGRKDGRISIMNEALFGLIPQSANISFLISSFKALGLSIKDLVVLQGSHTIGISHCS SFTNRIYNFTGNDDVDPTLDSEYIPNLRRKCRTATDQTTVVEMDPGSFKTFDNGYFKLVAKRRALFPSDAALMDNEETKAYVEKSLTSGSTFLKDFGDSM VKMGRIGVLTGDAGEIREVCYKINE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	0	1
AT1G32730			unknown protein		Lus10000258 [exp]	1.0	0.9152
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	4.2	0.8194
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	4.9	0.7759
					Lus10002332 [exp]	6.2	0.8757
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	7.1	0.7664
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	7.5	0.8757
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	8.7	0.8757
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	9.7	0.8757
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	10.7	0.8757
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	11.5	0.8757

Compare expression of checked genes

Lus10006756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.