Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21215 76 / 2e-17 unknown protein AT4G39900 40 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020063 [exp] 325 / 6e-115 AT4G21215 85 / 1e-20 unknown protein Lus10018373 [exp] 169 / 2e-53 AT4G21215 87 / 3e-21 unknown protein Lus10007639 [exp] 163 / 5e-51 AT4G21215 83 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G026900 [exp] 134 / 2e-39 AT4G21215 91 / 2e-22 unknown protein Potri.004G023000 [exp] 130 / 4e-38 AT4G21215 108 / 2e-29 unknown protein Potri.008G145000 [exp] 47 / 5e-07 AT4G39900 45 / 3e-06 unknown protein Potri.010G097100 [exp] 47 / 1e-06 AT4G21215 48 / 4e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006757 pacid=23163582 polypeptide=Lus10006757 locus=Lus10006757.g ID=Lus10006757.BGIv1.0 annot-version=v1.0 ATGGAGTCTGCACAGAAGATCTCAGTGGTGGATCATATTAACAAATTCCAGTACACACCTGAGACGCCGGATAACTTCGTCATTGACATGGAGGATTTCT CAACCACCACTACCACCACCAGCAAGGAAAGCTACGCCAATTCGAGAATTACATTGCAGAGGAGTGTTTCGAGGAAAGGGTTCATTGGTGATAAGAAAAG CACCAATTCTAACGGCTCCGTGGCTAAAGAGAAGTGTTCGGCAGTTTCGTCACCGAGAGCAGAAGCATCTTCAGCAGCTTTGGCAGGAGCTAGCACGCCG GAAATGGATCATTCTTCTGGCAACTCCAATGCACAAGGAGGCCATCATCAGATCACAATCACCTCCGCAGCTAGCAACATCAAGGCCACCACAATCGATG GCCGGTGCTCCCCCAGAAGGAACAGTTTCAAGAGGTCTCAAGCTTCCTGGCTGCTTGATCCTCGAAAAGTCCTCTTCTTCTTTGCCACACTGTCGAGCAT AGGTACATTGTTGCTGATATGCTTCACGCTCTCCATTGTCCAGTCAGATGACGCTGCGATTCTCGAGTGA
AA sequence Show only first row Show all	>Lus10006757 pacid=23163582 polypeptide=Lus10006757 locus=Lus10006757.g ID=Lus10006757.BGIv1.0 annot-version=v1.0 MESAQKISVVDHINKFQYTPETPDNFVIDMEDFSTTTTTTSKESYANSRITLQRSVSRKGFIGDKKSTNSNGSVAKEKCSAVSSPRAEASSAALAGASTP EMDHSSGNSNAQGGHHQITITSAASNIKATTIDGRCSPRRNSFKRSQASWLLDPRKVLFFFATLSSIGTLLLICFTLSIVQSDDAAILE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21215			unknown protein		Lus10006757 [exp]	0	1
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	3.2	0.8617
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	5.9	0.8664
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	6.2	0.8564
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	10.7	0.8341
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	13.2	0.8317
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	13.4	0.7888
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	13.6	0.8360
AT1G74030		ENO1	enolase 1 (.1)		Lus10027255 [exp]	16.2	0.8309
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	17.3	0.8423
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	19.4	0.7925

Compare expression of checked genes

Lus10006757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.