Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21210 476 / 7e-168 ATRP1 PPDK regulatory protein (.1.2) AT3G01200 422 / 5e-147 AtRP2 PPDK regulatory protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022900 [exp] 550 / 0 AT4G21210 482 / 2e-170 PPDK regulatory protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03618 [flax] [poplar] Kinase-PPPase Kinase/pyrophosphorylase
Representative CDS sequence Show only first row Show all	>Lus10006758 pacid=23163568 polypeptide=Lus10006758 locus=Lus10006758.g ID=Lus10006758.BGIv1.0 annot-version=v1.0 ATGGTTCCTTCTTCCGGTCTGAACGTTCCGAACCTCCCCCAACCGCCGTCCTCCGCTGGCTCCGAACCTAATCCCAAACGAACCGCCCCATCCAAACCTA ACTCCCTACCTCTTCCCGCCACCGTTTCCCACCCCGCGAAATCCGATTGCGATCCTCTTTCTCGGAAACTCAAAGCCAGCTCTCAGCTCAACCGCTGGTC CAGAGCTCGAGCAATCCGTTCCGGCCGCAAATTGGAACGCCCAGGTCACCAACCTCGCGTCGTCAATCGAGTCGGCTCACCTGACCTGCTTGATCACCGT GAATCGCCTGTGTTCGGTGGAGAAAGCAGCAAAGACCATGACGATGCCGCCGCCGCCGGCGGGAAATCCATTTACATGGTGTCGGACGGAACCGGCTGGA CGGCCGAACACTCGGTTACCGCCGCGCTGGGGCAGTTCGATTACTGCTTAGTCGATCGTGGATGTCCCGTTAATACTCATCTCTTCTCTGGGATTGAGGA CGTGGAACAGTTGCTGGAGATCGTGAAGCAGGCGGCGAAAGAAGGAGCGCTAGTTATCTACACTTTAGCAGATTCATCCATGGCTGAATCCGTTAGAAAG GCCTGCGAGATTTGGGGGATTCCGTCCGCCGACATTTTAGGACCGATTACGGTGGCAATTGCTAATCACCTCGGCGTATCACCCTCTGGGATTCCTCGTT TAGCTGCCGGAAGGAACGTCCCGCTATCGGAGGACTATTTCCGGCGAATCGAGGCAGTCGAGTTCACGATCAAGCAAGACGACGGAGCTTTGCCTAAGAA CTTGATGAAAGCTGATATAGTTCTCGTTGGTGTTTCCAGGACAGGGAAGACACCACTGTCGATCTACCTAGCGCAGAAAGGTTACAAAGTCGCTAATGTA CCTGTTGTGAATGGCGTGGATTTGCCTAAGAGCTTGTTTGACGTGGACCCTGAGAAGGTGTTTGGGTTGACTATCAATCCTCATGTTCTACAAGCGATTC GGAGAGCTAGAGCTAAAACACTTGGATTCGGTGAAGACTCGAGGAGTAATTATTCGGAGATGGATCATGTTAAGGAGGAATTGGAGTACGCTCGTAGGAT CTTTGCACATAATCCTGCTTGGCCAGTGATTGAAGTGACAGGAAAGGCAATTGAAGAAACTGCAGCAGTTGTGTTGAGGCTTTACCATGATAGGAAGAAT AGATGTTCAATGCCGCGAATCTCGAAACGCTACTAG
AA sequence Show only first row Show all	>Lus10006758 pacid=23163568 polypeptide=Lus10006758 locus=Lus10006758.g ID=Lus10006758.BGIv1.0 annot-version=v1.0 MVPSSGLNVPNLPQPPSSAGSEPNPKRTAPSKPNSLPLPATVSHPAKSDCDPLSRKLKASSQLNRWSRARAIRSGRKLERPGHQPRVVNRVGSPDLLDHR ESPVFGGESSKDHDDAAAAGGKSIYMVSDGTGWTAEHSVTAALGQFDYCLVDRGCPVNTHLFSGIEDVEQLLEIVKQAAKEGALVIYTLADSSMAESVRK ACEIWGIPSADILGPITVAIANHLGVSPSGIPRLAAGRNVPLSEDYFRRIEAVEFTIKQDDGALPKNLMKADIVLVGVSRTGKTPLSIYLAQKGYKVANV PVVNGVDLPKSLFDVDPEKVFGLTINPHVLQAIRRARAKTLGFGEDSRSNYSEMDHVKEELEYARRIFAHNPAWPVIEVTGKAIEETAAVVLRLYHDRKN RCSMPRISKRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	0	1
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	1.4	0.9096
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10011812 [exp]	3.7	0.8488
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	4.5	0.8509
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	4.5	0.8470
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	6.0	0.8476
AT3G01860			unknown protein		Lus10041572 [exp]	6.6	0.8521
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	9.9	0.8537
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	10.4	0.8610
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	10.6	0.8312
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	12.0	0.8410

Compare expression of checked genes

Lus10006758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.