Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 400 / 7e-140 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 260 / 7e-85 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT4G10490 158 / 2e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G58660 156 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G12010 153 / 8e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 152 / 3e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 151 / 8e-43 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 150 / 2e-42 ATACO2, ACO2 ACC oxidase 2 (.1) AT3G19010 150 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G05600 148 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007640 [exp] 458 / 7e-163 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 451 / 4e-160 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 351 / 5e-120 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 347 / 4e-119 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 343 / 9e-118 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 341 / 8e-117 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10021002 [exp] 165 / 5e-48 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 149 / 2e-41 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10031294 [exp] 153 / 4e-41 AT5G58520 801 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022800 [exp] 464 / 5e-165 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 451 / 3e-160 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 341 / 2e-116 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 339 / 4e-116 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 338 / 2e-115 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 316 / 5e-107 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 304 / 3e-102 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 198 / 6e-61 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 166 / 2e-48 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 162 / 1e-46 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006759 pacid=23163575 polypeptide=Lus10006759 locus=Lus10006759.g ID=Lus10006759.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGATAGACCCGCCATTCCACGAGGCATACAAGGACCTCTTGGAAGAAGGAGAAGATGATGAAGGAGGCGAGCACTCACCGCCGGACATCG TAGAAGCTTGCGAGCTACCGGTGATCGACCTAGCAAGGCTGACAGGTTTCGAGAGGGGGGAATGTAAGGCCGAGATGGTGAGGGCGTCGGAGGAGTGGGG GTTCTTCCAGGTTGTGAACCATGGGATATCTCGCGAGATATTGGACCAGATGAGGCGTGAACAAATGAAGGTGTTCCGCCAACCGTTCGTGAAGAAGAGA GGAGAAGTCGGGAAATTCTCGCCGGGGACTTACCGTTGGGGGACTCCGACGGCCACTTGTCTCAAACAGTTGGCTTGGTCGGAAGCTTTCCATATTCCCA TGACCGATATCTCGGCTTCCCCAAGTGCTAACCCGTCGTTCAATAGCCTAAGCACAGCGATGGAGGAGTTCGCGACGACGGTGGCCGACCTGGCGCAGAA ACTGGCGGAGATACTGGCAGAAAATCTGGGAAGGAAGTCGAGCTTCTTCAAAGAGAAGTGTGTGGCGAGTAGTTGCTATCTAAGAATGAACAGATACCCA CCTTGTCCAATCAATCATGTGTTTGGATTGATGCCACATACAGACAGCGACTTCCTCACAATACTGTATCAGGACCATGTTGGTGGCCTCCAGTTGGTCC GAGATGGCAACTGGTTCGCCGTCAACCCCAATCCTCGAGCACTCATCATCAACATCGGCGACTTGTTCCAGGCGTGGAGTAATGACGTGTACAAGAGCGT TGAACACAGGGTGATGACCAACTCATCAATAGAGAGATTCTCTACAGCATATTTCTTTTGTCCATCCTACGCCACCGAAATCAACAGTGGTTACGATCAT GATCAGTCATCGGTTTATCGCAAGTTTAGCTTCAAAGAATATAGGGAAAAAGTGCAGGAAGATGTCCAGAAACTAGGTTATAAAGTAGGACTTCCTCGGT TTAATGTATACTCCCTAGTTAAAGATGCATAA
AA sequence Show only first row Show all	>Lus10006759 pacid=23163575 polypeptide=Lus10006759 locus=Lus10006759.g ID=Lus10006759.BGIv1.0 annot-version=v1.0 MEEEIDPPFHEAYKDLLEEGEDDEGGEHSPPDIVEACELPVIDLARLTGFERGECKAEMVRASEEWGFFQVVNHGISREILDQMRREQMKVFRQPFVKKR GEVGKFSPGTYRWGTPTATCLKQLAWSEAFHIPMTDISASPSANPSFNSLSTAMEEFATTVADLAQKLAEILAENLGRKSSFFKEKCVASSCYLRMNRYP PCPINHVFGLMPHTDSDFLTILYQDHVGGLQLVRDGNWFAVNPNPRALIINIGDLFQAWSNDVYKSVEHRVMTNSSIERFSTAYFFCPSYATEINSGYDH DQSSVYRKFSFKEYREKVQEDVQKLGYKVGLPRFNVYSLVKDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	2.2	0.9038
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	2.4	0.9026
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	3.9	0.8965
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	4.5	0.8863
					Lus10016101 [exp]	5.9	0.8725
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	7.1	0.8804
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	8.4	0.8694
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	9.9	0.8723
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	11.0	0.8452
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	11.5	0.8507

Compare expression of checked genes

Lus10006759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.