Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61770 405 / 3e-143 Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 69 / 7e-13 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT4G21180 69 / 1e-12 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT1G79940 68 / 1e-12 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT5G48030 65 / 2e-11 GFA2 gametophytic factor 2 (.1) AT1G76700 63 / 5e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G80030 63 / 6e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 63 / 6e-11 DNAJ heat shock family protein (.1) AT4G39960 62 / 1e-10 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G21080 62 / 1e-10 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020062 [exp] 558 / 0 AT1G61770 411 / 1e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10011934 [exp] 72 / 5e-14 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 71 / 1e-13 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 71 / 2e-13 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 69 / 8e-13 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10002852 [exp] 68 / 2e-12 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10003380 [exp] 66 / 1e-11 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10019421 [exp] 65 / 1e-11 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030827 [exp] 65 / 2e-11 AT1G24120 545 / 0.0 ARG1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022600 [exp] 476 / 3e-171 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 75 / 6e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 74 / 1e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.016G120000 [exp] 69 / 9e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G058100 [exp] 66 / 4e-12 AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) Potri.017G148800 [exp] 66 / 6e-12 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.004G072200 [exp] 66 / 6e-12 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.005G073900 [exp] 65 / 1e-11 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.005G260400 [exp] 64 / 2e-11 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.007G094900 [exp] 64 / 2e-11 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10006760 pacid=23163548 polypeptide=Lus10006760 locus=Lus10006760.g ID=Lus10006760.BGIv1.0 annot-version=v1.0 ATGTCCCCGTCGGCATCGACATGGTGGCGCACGACGGTGGCTGTTCTCGTGCTCAGTTCGCTCTTCGTAGTTCCGGCGACGGCCATTTACTGCGACGAAG ATGATTGCTATGATCTACTCGGGGTGACTCAGAGCGCTAATGCGTCGGAGCTCAAGAAGGCTTATTACAAGCTCTCATTGAAACATCATCCGGATAAGAA TCCTGATCCGGAATCGAAGAAGCTTTTCGTTAAAATTGCCAATGCTTACGAGATTCTTAAAGATGAAGCTACAAGGGAGCAATATGATTATGCCATTGCG CATCCAGAGGAGGTATTCTACAATACTGCACGGTACTACCAGGCTTATTATGGTCACAAGACGGATCCTCGCATAGTCTTGGTCGGGCTTCTTCTACTGC TTTCTGGATTTCAGTATCTGAATCAGCAGTCTAGATACCATCAGGCAGTTGAGATGGTCAAGAAGACACCTGCATACAAGAACAAGCTGCGTGCTTTGGA ACTTGAGCGTAATGGTGGTCTTTCATCCAAGAAGAAGAATAACAGGCAGATGGACAAAAAAGCCGATGAAGATCTCAGTAAAGAACTTCAGCTGGACATA AAAGGTGCTAAAATACCGTGTGTCTGGGAACTTATTGGCATCCGTGTGGTTCTTCTACCTTACACCCTTGGAAAGCTGTTGTTATGGAATGGCTGCTGGT TATGGAGATACAATGTGAAGAAAGCTCCATATGCCTGGGAAGATGCTTGCTATCTAACCCGGAGGTCTCTGAGAGTGCCACTTGATGCCTGGGGAAACAT GGATGAATCAACAAAGGAAGACCTTGTTCAACGGCGTTTGTGGGAAAAGTCCAACTTCGAAAGCTACGTAGCTGATATGCGCAAGGAGTCGAAGCGCAGG AGATAA
AA sequence Show only first row Show all	>Lus10006760 pacid=23163548 polypeptide=Lus10006760 locus=Lus10006760.g ID=Lus10006760.BGIv1.0 annot-version=v1.0 MSPSASTWWRTTVAVLVLSSLFVVPATAIYCDEDDCYDLLGVTQSANASELKKAYYKLSLKHHPDKNPDPESKKLFVKIANAYEILKDEATREQYDYAIA HPEEVFYNTARYYQAYYGHKTDPRIVLVGLLLLLSGFQYLNQQSRYHQAVEMVKKTPAYKNKLRALELERNGGLSSKKKNNRQMDKKADEDLSKELQLDI KGAKIPCVWELIGIRVVLLPYTLGKLLLWNGCWLWRYNVKKAPYAWEDACYLTRRSLRVPLDAWGNMDESTKEDLVQRRLWEKSNFESYVADMRKESKRR R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10006760 [exp]	0	1
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10013228 [exp]	14.1	0.8112
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	14.4	0.8082
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	152.5	0.7295
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	160.0	0.7364
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	175.1	0.7045
AT4G31460			Ribosomal L28 family (.1)		Lus10028995 [exp]	227.8	0.7194

Compare expression of checked genes

Lus10006760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.