Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018908 [exp] 89 / 5e-21 ND / Lus10028608 [exp] 82 / 2e-18 ND / Lus10019696 [exp] 72 / 3e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006761 pacid=23163567 polypeptide=Lus10006761 locus=Lus10006761.g ID=Lus10006761.BGIv1.0 annot-version=v1.0 ATGGATAATTCATATGAAATGTTTACTGCAGAACAGTTTAATGTGGATCAGCCACCAACAATGGAGGATGTTCTACAAGGCCAAGTTGATGCTACAATCA TCATTCAGTCACCCCAAACAAATGATGTTCTACAAGGGCAAGTTGATTCTAATGTAGTTGGAGAAATTCATCAGGATAATGAACCAGTATGTGAAATGAC ACAGTCATTGGAACATGACCCTACGGTTCTAACAAGACTGTCTGTGAAACTTAGAGAACTCTTCTCAACCGCTAAGCAGGCTCTCGGAAACTTGAAACTG ACTTCTGCATCAACGGGAACACATCCTCTATCTTTAGATGTTCCCGAAGAGTTTATGGATAATCTTGCAAAGATTGAAGAGAAGTTAGATTCAACCAACA AGGTGGGAGAAGGTAGTAACCAAGGTGGTCATTTATCTTTGGCTCAAAGGCTACAAGGATGGACCATTCAGTTGATACGTCGAGAATGTGGCATTGATGA TGGGCACTATTACCATCACGATGTGCACTTCCGGTCGATAACAACGGCAATTGACTTCATATTACCTAATGTTGTGCCTAAAAAAATTAAGAGGAAACAA CAAGCATCTAATCCGAGGACTGGAAATTCTAGAGACCAATTTCCAATCCCAATTCCCGAATACAAGGCTAGAAACGAAGACGACCACCATTACTCTTACT CGCTGGAGCTCTATTTAAGGAGTTCTTTATCCAATCTCCATCGCGCAGCCTACCGATTTCAAGAACCGGAAGTCGCAGCGTCCCTCTGA
AA sequence Show only first row Show all	>Lus10006761 pacid=23163567 polypeptide=Lus10006761 locus=Lus10006761.g ID=Lus10006761.BGIv1.0 annot-version=v1.0 MDNSYEMFTAEQFNVDQPPTMEDVLQGQVDATIIIQSPQTNDVLQGQVDSNVVGEIHQDNEPVCEMTQSLEHDPTVLTRLSVKLRELFSTAKQALGNLKL TSASTGTHPLSLDVPEEFMDNLAKIEEKLDSTNKVGEGSNQGGHLSLAQRLQGWTIQLIRRECGIDDGHYYHHDVHFRSITTAIDFILPNVVPKKIKRKQ QASNPRTGNSRDQFPIPIPEYKARNEDDHHYSYSLELYLRSSLSNLHRAAYRFQEPEVAASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006761 [exp]	0	1
					Lus10037837 [exp]	1.0	0.9937
AT3G05610			Plant invertase/pectin methyle...		Lus10033466 [exp]	2.4	0.9574
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	5.5	0.9229
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	6.9	0.9339
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	7.7	0.9286
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	11.0	0.9154
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	13.0	0.9139
					Lus10004634 [exp]	14.3	0.9081
					Lus10001872 [exp]	16.1	0.9358
AT5G37360			unknown protein		Lus10003097 [exp]	18.1	0.8417

Compare expression of checked genes

Lus10006761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.