Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04900 79 / 4e-19 RIC10 ROP-interactive CRIB motif-containing protein 10 (.1) AT4G28556 72 / 5e-16 RIC7 PAK-box/P21-Rho-binding family protein (.1) AT1G04450 72 / 1e-15 RIC3 ROP-interactive CRIB motif-containing protein 3 (.1) AT2G33460 71 / 2e-15 RIC1 ROP-interactive CRIB motif-containing protein 1 (.1) AT4G21745 68 / 9e-15 PAK-box/P21-Rho-binding family protein (.1) AT2G20430 67 / 4e-14 RIC6 ROP-interactive CRIB motif-containing protein 6 (.1) AT3G23380 66 / 1e-13 RIC5 ROP-interactive CRIB motif-containing protein 5 (.1) AT1G03982 53 / 4e-09 PAK-box/P21-Rho-binding family protein (.1) AT1G61795 52 / 7e-09 PAK-box/P21-Rho-binding family protein (.1) AT1G27380 42 / 2e-05 RIC2 ROP-interactive CRIB motif-containing protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007648 [exp] 136 / 6e-41 AT4G04900 88 / 2e-22 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10018362 [exp] 136 / 6e-41 AT4G04900 94 / 2e-24 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10020060 [exp] 115 / 3e-32 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011805 [exp] 75 / 1e-16 AT2G33460 97 / 2e-24 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10003625 [exp] 69 / 5e-15 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10008243 [exp] 68 / 2e-14 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10021168 [exp] 62 / 2e-11 AT2G33460 81 / 3e-17 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10021974 [exp] 39 / 0.0005 AT2G33460 51 / 4e-08 ROP-interactive CRIB motif-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025300 [exp] 108 / 2e-30 AT4G04900 89 / 5e-23 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.004G020650 [exp] 103 / 2e-28 AT4G04900 73 / 1e-16 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.008G168900 [exp] 86 / 1e-20 AT2G33460 101 / 4e-26 ROP-interactive CRIB motif-containing protein 1 (.1) Potri.010G069500 [exp] 85 / 5e-20 AT4G28556 99 / 1e-24 PAK-box/P21-Rho-binding family protein (.1) Potri.002G035500 [exp] 79 / 5e-18 AT2G20430 105 / 1e-27 ROP-interactive CRIB motif-containing protein 6 (.1) Potri.005G227500 [exp] 78 / 7e-18 AT4G28556 106 / 5e-28 PAK-box/P21-Rho-binding family protein (.1) Potri.002G233400 [exp] 55 / 1e-09 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.014G147000 [exp] 46 / 2e-06 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.013G086600 [exp] 39 / 0.0004 AT5G16490 109 / 7e-31 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006763 pacid=23163528 polypeptide=Lus10006763 locus=Lus10006763.g ID=Lus10006763.BGIv1.0 annot-version=v1.0 ATGGGTACCAACAAGATTAAAGGGATCTACAGGGGATTCAAGTACATCATCCAAATCTTTGTTGTGAAGGAGAGAGAATTAGAAATTGGGCTGCCAACCG ATGTAAAGCATGTCGCTCACATCGGCTGTGATGGTACTGCAGGAAATCCACCCAGCTGGATGAGTGGACCTAAGATATCTCCAGAACTTTCATCATCGGT AAAAGCTTATGGTGGGAGTCCTAATAATAATGGAATCCCTAGGGACTCCAGTACTAATTCAATGTTTTTCACTCCCAGGGCCTCCCCAGATTTGAACAGT TCATCAACGGGATATCATCATTTACCTGGAACAGCTTGCACCTTGGAAGATGCAATTCGGAGATCTGATAACCCATCGAGCAAACCAAAGAAACAGAAGA GGAAGAAGAAGACAAGATCATCTGCTTTAAAGGGTTCATCTTCCTTGTCCAAGAACTTACGATCGTCACCAAATACTAAATTCCATGAACTGGAGCCAAC TGTGGCTATACTAGCCTAG
AA sequence Show only first row Show all	>Lus10006763 pacid=23163528 polypeptide=Lus10006763 locus=Lus10006763.g ID=Lus10006763.BGIv1.0 annot-version=v1.0 MGTNKIKGIYRGFKYIIQIFVVKERELEIGLPTDVKHVAHIGCDGTAGNPPSWMSGPKISPELSSSVKAYGGSPNNNGIPRDSSTNSMFFTPRASPDLNS SSTGYHHLPGTACTLEDAIRRSDNPSSKPKKQKRKKKTRSSALKGSSSLSKNLRSSPNTKFHELEPTVAILA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10006763 [exp]	0	1
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	3.2	0.9343
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	6.5	0.9074
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	8.4	0.9299
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	11.9	0.9180
AT4G16400			unknown protein		Lus10038791 [exp]	12.8	0.9167
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	13.4	0.9147
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	13.6	0.9154
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10020669 [exp]	14.0	0.9082
AT5G05365			Heavy metal transport/detoxifi...		Lus10040965 [exp]	14.7	0.9111
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10036698 [exp]	15.0	0.8929

Compare expression of checked genes

Lus10006763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.