Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 72 / 1e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 65 / 5e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 63 / 2e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64065 51 / 4e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 49 / 3e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020060 [exp] 308 / 5e-108 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 258 / 9e-89 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 254 / 5e-87 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 102 / 7e-27 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 95 / 4e-24 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 94 / 8e-24 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 91 / 1e-22 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 91 / 2e-22 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 89 / 5e-22 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025100 [exp] 171 / 2e-54 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 134 / 1e-39 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 103 / 9e-28 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 93 / 1e-23 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 87 / 4e-21 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 81 / 3e-19 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 76 / 4e-17 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 66 / 2e-13 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 61 / 2e-11 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G159400 [exp] 51 / 5e-08 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10006764 pacid=23163541 polypeptide=Lus10006764 locus=Lus10006764.g ID=Lus10006764.BGIv1.0 annot-version=v1.0 ATGGGATGTCGTCCAGGGCTAAAGCTGTGCCTCCTAGTAACATCAATCCTCTTCATCCTTCTCATCATCGCTTCCACGATCCTCTTCTTCGTGGTACTCA AACCGAAAGAGCCGAAGATCACCACCAAATCGGTGACCCTCGACCGAATCGATTACTCCATCTTCCCCAAGCCGTACCTCAACCTCACCCTAAACATCGT GGTGGAAGTTGAGAACCCAAACTACGGCAACTTCCGCTACGACGACAGCAACGCCTACCTCTTGTACCGAGGCGGGCTGGTCGGGGTCTCGCCCATTCCG GCCGGCTACTCCAAGGCCCGGTCCACCGAGGTGATCCGGTCCAATGTCACGCTCATGACGGGCAAGTTTTTGGAGGATGTTGATTTCTACGGGGATTTGC TCGACGGTGTGATGAATTTTACCTCTACGTCGTCGTTGCATGGCCAAGCGTCCATGTTCAAGATACTCAAGGCGGAGATCACCAGCAATTGTACGTGTGA GATTTCGGTTCATGTGTCGAGTCAGAAGACCGATTCTATTTGTAAAACCGTCGTCAATCACTGA
AA sequence Show only first row Show all	>Lus10006764 pacid=23163541 polypeptide=Lus10006764 locus=Lus10006764.g ID=Lus10006764.BGIv1.0 annot-version=v1.0 MGCRPGLKLCLLVTSILFILLIIASTILFFVVLKPKEPKITTKSVTLDRIDYSIFPKPYLNLTLNIVVEVENPNYGNFRYDDSNAYLLYRGGLVGVSPIP AGYSKARSTEVIRSNVTLMTGKFLEDVDFYGDLLDGVMNFTSTSSLHGQASMFKILKAEITSNCTCEISVHVSSQKTDSICKTVVNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10006764 [exp]	0	1
					Lus10005514 [exp]	4.1	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	5.7	1.0000
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007110 [exp]	6.3	0.7102
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	6.9	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	8.0	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	9.2	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	9.8	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	10.6	1.0000
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041682 [exp]	11.3	0.8140
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	11.7	1.0000

Compare expression of checked genes

Lus10006764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.