Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04885 580 / 0 PCFS4 PCF11P-similar protein 4 (.1) AT5G43620 150 / 3e-39 Pre-mRNA cleavage complex II (.1) AT1G66500 150 / 4e-39 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT2G36480 139 / 9e-34 ENTH/VHS family protein (.1.2.3) AT2G36485 56 / 1e-08 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020058 [exp] 1250 / 0 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 835 / 0 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10018357 [exp] 820 / 0 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10023867 [exp] 176 / 4e-45 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10014370 [exp] 175 / 8e-45 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 174 / 2e-44 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 172 / 8e-44 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020300 [exp] 807 / 0 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 774 / 0 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.006G115600 [exp] 182 / 6e-47 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.017G017800 [exp] 174 / 5e-46 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 106 / 8e-24 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10006766 pacid=23163565 polypeptide=Lus10006766 locus=Lus10006766.g ID=Lus10006766.BGIv1.0 annot-version=v1.0 ATGCCCATCGACCACCTGCCGCCGCCACCGCCACCGGCGTCGATACTCGATAGGTTCAGGGCCTTGTTGAAGCAGCAGCAGGCCGGTAGGGTTCGCGGAG ATGACGATGATGTTATGGTGGGAGTTGCACCGTCATTGGCCGCCGACGAAGTTGCGCATCTATACGAGTTGATGCTCTCGGAATTGACTTTCAACTGCAA GCCTATCATCACTGATCTGACAATCGTCGCCGGGGAACACAGGGAGCATGGAGAAGGAATCACCGACGCTATTTGTGCTCGAATTATTGAGGCCCCGGCT GATCAAAAACTGCCTTCTTTATACCTGTTAGACAGTATTGTGAAGAACATTGGCCGTGAGTATGTTACGTACTTCTCTTCCAGGTTGCCAGAGGTTTTCT GCAAGGCATACAGACAAGTGCATCCTCAAGTCCATCCTTCCATGCGACATCTCTTCGGTACTTGGGCCAATGTATTTCCTCCAACTGTTCTTCGAAAGAT TGAGACCCAGCTTCAGTTTTCTCCTTCAGCTAACAATCCATCTTCTAGCTCAACTTCGTTGAGAGCTTCTGAGTCTCCCAGACCAACACATGGCATACAT GTCAACCCAAAGTACCTACGCCAACTGGACAATCCAACTTCTGAGAAAGTGGGAGCTCAAAGAATAGACTCTGCTGAAGGTTCAGCTCCTTCATCTTTTG CACTTGGAGGTACTAAGTTGCTTCCTTCTTCGACTTCCAGGATTGTGAGACCTTTATCTCCTGCAGCTGAGAGGCCATTATATTCAGAACTTAATGACTT TAGGCCATCAAATTCTCTTCAAAGATTTGGTCTTGGCAGAACTGAGGATGTAAATGAAGAGCCTGATGAATTGAAAAGAAGACACTATTTTGATGATAGA GAAAGGATATTTGAAACTTCTGCTGCTAACAGAGCTAGCAATGGACATGAGCATCTAGGTCCAAGAGCTCTGATAGATGCATATGGGGATGATAGAGGCA AAAAGATTGCAAATAAGAAGCCCCTGCAGCTTGATCATGTCAATGTGAATGGTAGGAGCGACAGGATGGGAACGAGATCATGGCAGAATACTGAAGAGGA GGAATTTGAATGGGAAGATATGAGCCCTACTTTAAACAGTCAGAAGAGGAGTAATAATTTACTGTCATTAGCTGCTCCATCATGGCCTGATTTTAGTGGC AACGCTGATGATTTATATCCTGGTGCCAATTCCAGTACGAATCCTGGAATCCAGATGCAGATGAATCAGAATGTACGCCCTAGGGATCCTCATGAAGACT TGAATTTGCCGCATAATTTTTCCCGGTCAACACATCTGCCATATGCTCGGGAACATCTGGCTCCTCTAGGTGAGAAACTCCTAGGTAGTGAAGCCCATCT TATCAACCCTCCATTTGTGCCGTCGAGAATGAGATCAGCAGTTGAGAGCAATATCTCTGGTTTGTCTTCTATAACTCCATCTCAACAGCCAACTTTTCCA TCACAGAGGCAAAGCACGAATCAGTTAGATCGAATAACTGCTAGCAGGGTTGCTACCAATTCAGAGATGTGGATGTCTGGCAACTTGTATGGACAACAAC AGTATAATAGTTTTGAGAACCAGCAGAATCAGAATAAAATGAATTCAATGCTGCCTCAGTTTCTGACGCATCAGGATGCTCAGGACAACTTTCCCCATTC TTCAATGGTTTCAATGCCACCTCAAACCCTTCTACATCCGTTAGGCCACGGGTATCCAATGCAACGGCAAGTAAGTGCTGTGAACATGCCTCCTGTTGAT TCAGTGCACTATGCTTGTGTACCTTTACCAGTCAATTACATCCTTAATAACTTCCATTTACAGGTCGGTGTAAGGCCACCTATGCCTCCAGGTCCTCCTG CTTCCCAGTTTCTAATAAGACCGCAGAATAGTGGTCCAGTTATGCCTAATCAACCGCCAATTGGCGCAATTTCTGGTTTATTTAACTCCCTTATGTCTCA AGGTTTGATCTCATTGACGAACCAGTTACCTGGGCAGGAGTCACTGGGGCTTGAATTTGAAGCTGATCGTCTTAAGGTGCGGCATGAGACTGCAATAACT GCCATGTATGCTGATCTCCCAAGACAGTGCATGACTTGCGGTCTTCGGTTCAAGTGCCAAGAAGAGCACCGCACCCACATGGATTGGCATGTTACTAGGA ATCGTATGTCTAAAAGCCGAAAGCAGAAACCTTCTCGCAAGTGGTTTGTTAGTGCAAGTATGTGGCTCACAGGTGCAGAGGCTTTGGGAACTGATTCTGT TCCTGGATTCTTGCCTCTTGAGAATGTCGTGGAGAAAAAAGATGAGGAGGAAGTGGCTGTTCCTGCCGATGAAGATCAGACGGCATGTGCGTTATGTGGA GAGCCTTTTGAGGATTTCTTTAGTGACGAAACCGAGGAATGGATGTATAAAGGAGCTGTGTATTTAAATGCGTCTCACGGATCTACAGTCGGCCTGGATA GGTCTCAGTTAGGCCCTATAGTGCATGCCAAATGCAGACCCGAATCTAGTGCAGTCCCCACCGAAGATTTAAGGCATGATGAAGGGACACTTAAATCATG TAAAAATTCAAGGACACAAACCGCTCCTGGATCAGTTCCAGGAGATTAA
AA sequence Show only first row Show all	>Lus10006766 pacid=23163565 polypeptide=Lus10006766 locus=Lus10006766.g ID=Lus10006766.BGIv1.0 annot-version=v1.0 MPIDHLPPPPPPASILDRFRALLKQQQAGRVRGDDDDVMVGVAPSLAADEVAHLYELMLSELTFNCKPIITDLTIVAGEHREHGEGITDAICARIIEAPA DQKLPSLYLLDSIVKNIGREYVTYFSSRLPEVFCKAYRQVHPQVHPSMRHLFGTWANVFPPTVLRKIETQLQFSPSANNPSSSSTSLRASESPRPTHGIH VNPKYLRQLDNPTSEKVGAQRIDSAEGSAPSSFALGGTKLLPSSTSRIVRPLSPAAERPLYSELNDFRPSNSLQRFGLGRTEDVNEEPDELKRRHYFDDR ERIFETSAANRASNGHEHLGPRALIDAYGDDRGKKIANKKPLQLDHVNVNGRSDRMGTRSWQNTEEEEFEWEDMSPTLNSQKRSNNLLSLAAPSWPDFSG NADDLYPGANSSTNPGIQMQMNQNVRPRDPHEDLNLPHNFSRSTHLPYAREHLAPLGEKLLGSEAHLINPPFVPSRMRSAVESNISGLSSITPSQQPTFP SQRQSTNQLDRITASRVATNSEMWMSGNLYGQQQYNSFENQQNQNKMNSMLPQFLTHQDAQDNFPHSSMVSMPPQTLLHPLGHGYPMQRQVSAVNMPPVD SVHYACVPLPVNYILNNFHLQVGVRPPMPPGPPASQFLIRPQNSGPVMPNQPPIGAISGLFNSLMSQGLISLTNQLPGQESLGLEFEADRLKVRHETAIT AMYADLPRQCMTCGLRFKCQEEHRTHMDWHVTRNRMSKSRKQKPSRKWFVSASMWLTGAEALGTDSVPGFLPLENVVEKKDEEEVAVPADEDQTACALCG EPFEDFFSDETEEWMYKGAVYLNASHGSTVGLDRSQLGPIVHAKCRPESSAVPTEDLRHDEGTLKSCKNSRTQTAPGSVPGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	0	1
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	1.0	0.9188
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	2.4	0.8907
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	12.8	0.8719
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	13.1	0.8707
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	14.5	0.7710
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	15.7	0.8015
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	16.1	0.8011
AT3G61520			Pentatricopeptide repeat (PPR)...		Lus10040633 [exp]	16.2	0.8088
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	17.2	0.8390
AT5G50970			transducin family protein / WD...		Lus10032536 [exp]	17.7	0.7875

Compare expression of checked genes

Lus10006766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.