Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04880 513 / 0 adenosine/AMP deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020056 [exp] 731 / 0 AT4G04880 519 / 0.0 adenosine/AMP deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000100 [exp] 558 / 0 AT4G04880 544 / 0.0 adenosine/AMP deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10006768 pacid=23163557 polypeptide=Lus10006768 locus=Lus10006768.g ID=Lus10006768.BGIv1.0 annot-version=v1.0 ATGCTAACCCACCAAAATTCCGAAGCCCCATCACCAGATGAGGAATGGCGGCAGTGGATTTCCCTCCCCAAGGTCGAACTTCACGCCCATCTCAACGGTT CAGTCAGAGCTTCAACCCTTCTAGAATTAGCCAGAAATTTGGGCGAGAAAGGCCGCATTGCCTTCTCGGATGTGGAGCACGTTATACTTAAAGGTGATCG GTCAACGCGCGAAGTCTTCAAGCTGTTTGACTTGATTCATGTCCTCACTACCGACCACAAAACCGTCACAAGGATTACCAAAGAAGTAATTGAAGATTTT GCTGCTGAGAATGTTGTGTATTTGGAGTTGAGAACAACGCCTAAGAGAAATGATTCCATAGGAATGAGCAAGAGGTCATACATGGAAGCTGTAATGGCTG GTTTGAGGGCTGTTACTGAAATTGATTTGGATTTCGCTCCTCATATCAGCAGTGTGGATGGTGTAAGTTCTTCAACTTCCATTGCCATGAACGATGGAGA TGGCAGGAAGAGAATATATGTTAGAATTCTCCTCAGCATTGACCGTCGTGAGACAACTGAGGCTGCTATGGATACAGTCAAGCTTGCATTGGAGATGAGA GATGTAGGGGTTGTTGGGATCGACCTTTCCGGAAACCCTATTGTGGGTGAATGGACTACGTTCTTGCCTGCACTGCAATTCGCCCATCAGCAAGGTCTAT ACATAACGCTTCATTGTGGAGAGGTACCTAACTATGAGGAGGTCAATTCGATGCTCGACTTTCTTCCCCATAGAATCGGCCATGCTTGCTGCTTGGGAGA GCCGGAATGGAGGAAACTGAAATCGTCTAAGATACCGGTTGAGATATGTTTGACATCTAACATAATGACAGACACAATCCCATCACTTGACATTCATCAT TTTGCGGATCTCTATAATGCAAAACATCCCATGGTACTGTGCACCGACGATTCGGGGGTTTTCTCCACCAATCTTTCCAAGGAGTATAGCCTTGCCTCAA CTGCATTTGGTCTTGGAAAGAAGGAGCTGTTCCAGATTGCTAGAGACAGTGTAGAGTTCGTATTTGCTGATGGTTTTGTAAAGCAAGAGTTAAAGGATAT ATTCAGCTCTGCTGCGAATAAGTTCGACTTATGA
AA sequence Show only first row Show all	>Lus10006768 pacid=23163557 polypeptide=Lus10006768 locus=Lus10006768.g ID=Lus10006768.BGIv1.0 annot-version=v1.0 MLTHQNSEAPSPDEEWRQWISLPKVELHAHLNGSVRASTLLELARNLGEKGRIAFSDVEHVILKGDRSTREVFKLFDLIHVLTTDHKTVTRITKEVIEDF AAENVVYLELRTTPKRNDSIGMSKRSYMEAVMAGLRAVTEIDLDFAPHISSVDGVSSSTSIAMNDGDGRKRIYVRILLSIDRRETTEAAMDTVKLALEMR DVGVVGIDLSGNPIVGEWTTFLPALQFAHQQGLYITLHCGEVPNYEEVNSMLDFLPHRIGHACCLGEPEWRKLKSSKIPVEICLTSNIMTDTIPSLDIHH FADLYNAKHPMVLCTDDSGVFSTNLSKEYSLASTAFGLGKKELFQIARDSVEFVFADGFVKQELKDIFSSAANKFDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04880			adenosine/AMP deaminase family...		Lus10006768 [exp]	0	1
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	9.9	0.6573
					Lus10038468 [exp]	100.2	0.5546
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	123.3	0.5529
AT5G20950			Glycosyl hydrolase family prot...		Lus10013390 [exp]	150.9	0.5317
AT3G59680			unknown protein		Lus10027060 [exp]	208.8	0.5082
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	255.6	0.4970

Compare expression of checked genes

Lus10006768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.