Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61870 326 / 7e-111 PPR336 pentatricopeptide repeat 336 (.1) AT1G11630 296 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 137 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 135 / 5e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 129 / 8e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 121 / 9e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 120 / 2e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 120 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 119 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 118 / 8e-30 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020055 [exp] 525 / 0 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10041727 [exp] 147 / 2e-42 AT4G36680 360 / 8e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 135 / 4e-37 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 131 / 2e-35 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 130 / 4e-35 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 127 / 4e-34 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018393 [exp] 121 / 7e-32 AT3G13160 290 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 119 / 5e-31 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 117 / 4e-29 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018000 [exp] 345 / 3e-118 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.011G001100 [exp] 316 / 6e-107 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1) Potri.004G030000 [exp] 149 / 1e-42 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 143 / 4e-40 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 142 / 2e-39 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 130 / 4e-35 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 129 / 1e-34 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 128 / 3e-34 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 127 / 4e-34 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 130 / 5e-34 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006769 pacid=23163570 polypeptide=Lus10006769 locus=Lus10006769.g ID=Lus10006769.BGIv1.0 annot-version=v1.0 ATGCTCGACGATGCGATCAGAACGTTCAAGGACTACCACAGCAACCTCGATGAACCTGGCTCGGCGAGGTTGTTGAACGCCCTACTGTTCGCATGTACCC TGGCGAAGAATTACGGCGGGGTAAAGAGGATCTTTGTTGATTTCCCTACGATTTATAACATTCAACTGAATTTGGATACGTATAACGTAGTTATCAAAGC GTTTACTGAGTCCGGGAGTTCGAGCTCGGTTTATTCGATTCTGGAGGAGATGAAAAGGAACAGAGTGAAACCAAATGCCACCAGCTTCTCGCATTTGCTA GCTGGTTTCTATAAAGAAGAGAAGTTTGAGGACGTAGGGAAAGTTTTGGACTTGATGAACACAGAGTATGGGGTGCACCCTGGGGTGAGTACTTACAATG TTAGAATCCAGAGTTTGTGTAAGCTCAAGAGAGTATCGGAGGCAAAGGCTCTGTTCGATAAGATGGTATTCGATGGCCCTAAGCCGAATTCAGTCACATA TACGCAGTTGATTCACGGATTCTGTAACCAAGGGGATTTGGAGGAAGCGAAGAAGTTTTTTAACTCTATGATGCATAGAGGGTGCGAACCAGAAAGTGAT TGTTATTTCACTTTGATTCATTTCTTGTGTCTGGGGAAGGATTTCAAGTCAGCATTGCCGATTTGCAAAGCGAGCATGGAGAAGAAATGGGTGCCGAATT TTTCTACGATGAAGATGTTGGTGAATGGGCTTGCAAGTACTGGAAAGGTTGAAGAGGCTAAGGAGATTGCGGCGCAGATGAAAGAGAAGTTCCCCAAGAC TGTCCATTTGTGGGATGAGGTTGAAGCTGGCTTCCCGCAGTAG
AA sequence Show only first row Show all	>Lus10006769 pacid=23163570 polypeptide=Lus10006769 locus=Lus10006769.g ID=Lus10006769.BGIv1.0 annot-version=v1.0 MLDDAIRTFKDYHSNLDEPGSARLLNALLFACTLAKNYGGVKRIFVDFPTIYNIQLNLDTYNVVIKAFTESGSSSSVYSILEEMKRNRVKPNATSFSHLL AGFYKEEKFEDVGKVLDLMNTEYGVHPGVSTYNVRIQSLCKLKRVSEAKALFDKMVFDGPKPNSVTYTQLIHGFCNQGDLEEAKKFFNSMMHRGCEPESD CYFTLIHFLCLGKDFKSALPICKASMEKKWVPNFSTMKMLVNGLASTGKVEEAKEIAAQMKEKFPKTVHLWDEVEAGFPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	2.2	0.8332
AT5G56310			Pentatricopeptide repeat (PPR)...		Lus10002024 [exp]	2.8	0.8097
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	2.8	0.8212
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	6.6	0.8289
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	8.1	0.8181
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	8.9	0.8054
AT5G60670			Ribosomal protein L11 family p...		Lus10019935 [exp]	9.2	0.8279
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	12.0	0.7992
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	12.7	0.8162
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	14.5	0.7562

Compare expression of checked genes

Lus10006769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.