Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21790 395 / 1e-139 ATTOM1, TOM1 tobamovirus multiplication 1 (.1) AT2G02180 305 / 5e-104 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 278 / 1e-93 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020054 [exp] 495 / 5e-179 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1) Lus10007663 [exp] 472 / 5e-170 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1) Lus10018348 [exp] 462 / 4e-166 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018100 [exp] 431 / 1e-153 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1) Potri.011G001000 [exp] 419 / 2e-149 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1) Potri.010G097900 [exp] 305 / 4e-104 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1) Potri.008G144400 [exp] 303 / 3e-103 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [flax] [poplar] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Lus10006770 pacid=23163564 polypeptide=Lus10006770 locus=Lus10006770.g ID=Lus10006770.BGIv1.0 annot-version=v1.0 ATGACGCGGCCACTGCAACTGTTGATGTTGCCGGCGATGGAATTCGTCGGACTCGGTGGCAGCTGGTGGAACGAGATCAATGAGTCTGCTCAGTGGCAGG ATGGGATTTTCTACTCGCTCTCCGCTGCTTTCTCCCTCGTTTCGCTGATTGCCTTGATTCAATTAATTAGGATTGAATTGAGAGTGCCGGAGTATGGCTG GACAACGCAGAAGGTTTTCCACCTTATGAACTTCATTGTTAATGGAGTACGGGCCCTTGTGTTTGGATTTCACATGCAAGTATTCGGTTTGCATCCCAAG GTTCTGATGTCATTGTCGTTGGATCTCCCGGGGCTTCTATTCTTCTCTACATACACCCTGCTTGTGCTCTTTTGGGCTGAGATATATCATCAGGCAAGGA GTTTGCCAACGGATAAACTGAGGGTTCTCTACATTTCAATAAATAGCGTAATATACTGCATACAGGCTGTCATCTGGGTTTATCTGTGGGTTGATGACAA CAGTGTCGTGGAGATGGTTGGGAAGATATTTGTTGCAGTGGTATCAATTATTGCTGCTTTAGGGTTTTTGCTCTATGGAGGAAGACTCTTTTTCATGCTC AGGCGTTTCCCAATTGAATCCAAAGGCAGAAGGAAGAAGCTTCATGAGGTTGGATCGGTTACAGCAATTTGTTTCACATGCTTCCTCATCCGATGCTTTG TGGTGCTTCTATCTGCCTTCGATGCAGATGCATCTCTTGACGTTCTCGATCATCCAGTCTTGAACTTGATTTACTACACGCTGGTCGAGATTCTACCCTC AGCGTTGGTGCTCTTCATCCTCCGAAAGCTACCTCCGAAGCGAGTGTCCGCTCAGTACCATCCAATCCGTTAG
AA sequence Show only first row Show all	>Lus10006770 pacid=23163564 polypeptide=Lus10006770 locus=Lus10006770.g ID=Lus10006770.BGIv1.0 annot-version=v1.0 MTRPLQLLMLPAMEFVGLGGSWWNEINESAQWQDGIFYSLSAAFSLVSLIALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRALVFGFHMQVFGLHPK VLMSLSLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRVLYISINSVIYCIQAVIWVYLWVDDNSVVEMVGKIFVAVVSIIAALGFLLYGGRLFFML RRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVLLSAFDADASLDVLDHPVLNLIYYTLVEILPSALVLFILRKLPPKRVSAQYHPIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10006770 [exp]	0	1
AT3G10430			F-box and associated interacti...		Lus10031020 [exp]	1.4	0.8228
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	33.0	0.7695
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	53.7	0.7507
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	74.3	0.7365
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	79.8	0.7462
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10020412 [exp]	209.7	0.7045

Compare expression of checked genes

Lus10006770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.